View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17351_low_35 (Length: 215)
Name: NF17351_low_35
Description: NF17351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17351_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 41168451 - 41168649
Alignment:
| Q |
1 |
gttgtgttatgttaggattgaaccaaggtatcaagaaattttaagcaaggacatagtagaagctacaaaagatggtatcaaggttagagttattgcaggg |
100 |
Q |
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| T |
41168451 |
gttgtgttatgttaggattgaaccaaagtatcaagaaattttaagcaaggacatagtagaagctacaaaagatggtatcaaggttagagttattgcaggg |
41168550 |
T |
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| Q |
101 |
gaagctcttggaataaagtcatcaatttacacaaggacaccaacaatgtatttggactttactcttaaacctggatcacacttgcaacaacttgtacct |
199 |
Q |
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| T |
41168551 |
gaagctcttggaataaagtcaccaatttacacaaggacaccaacaatgtatttggactttactcttaaacctggagcacacttgcaacaacttgtacct |
41168649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 41170403 - 41170578
Alignment:
| Q |
7 |
ttatgttaggattgaaccaaggtatcaagaaattttaagcaaggacatagtagaagctacaaaagatggtatcaaggttagagttattgcaggggaagct |
106 |
Q |
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||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| || ||||||||| |
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| T |
41170403 |
ttatgttaggattgatccaagataccaagaaattttaagcaaggacatagtagaagctacgaaagatggtttcatggttagagttatggctggggaagct |
41170502 |
T |
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| Q |
107 |
cttggaataaagtcatcaatttacacaaggacaccaacaatgtatttggactttactcttaaacctggatcacacttgcaacaacttgtacct |
199 |
Q |
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| T |
41170503 |
cctggaataaagtcaccgatt-----------------aatgtatttggactttactcttaaacatggagcacaattgcaacaacttgtacct |
41170578 |
T |
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