View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17351_low_36 (Length: 202)

Name: NF17351_low_36
Description: NF17351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17351_low_36
NF17351_low_36
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-202)||(83197-83400)
[»] chr6 (4 HSPs)
chr6 (147-202)||(8365486-8365541)
chr6 (151-202)||(10294144-10294195)
chr6 (148-202)||(16766734-16766788)
chr6 (154-202)||(16488564-16488612)
[»] chr3 (3 HSPs)
chr3 (147-202)||(41961617-41961672)
chr3 (148-202)||(14832136-14832190)
chr3 (152-199)||(750590-750637)
[»] scaffold0003 (1 HSPs)
scaffold0003 (148-202)||(241631-241685)
[»] chr7 (2 HSPs)
chr7 (149-202)||(25822692-25822745)
chr7 (148-202)||(24339679-24339733)
[»] chr5 (4 HSPs)
chr5 (147-200)||(30183588-30183641)
chr5 (148-202)||(21542067-21542121)
chr5 (148-202)||(36642730-36642784)
chr5 (154-202)||(21814298-21814346)
[»] chr2 (4 HSPs)
chr2 (147-202)||(26769548-26769603)
chr2 (148-202)||(35056905-35056959)
chr2 (148-202)||(34784950-34785004)
chr2 (149-202)||(44860357-44860410)
[»] chr8 (3 HSPs)
chr8 (148-202)||(15816097-15816151)
chr8 (148-200)||(22652015-22652067)
chr8 (154-202)||(26902149-26902197)
[»] chr4 (3 HSPs)
chr4 (148-202)||(30982846-30982900)
chr4 (147-202)||(19482705-19482760)
chr4 (154-202)||(46083965-46084013)
[»] scaffold0279 (1 HSPs)
scaffold0279 (147-202)||(17847-17902)
[»] scaffold0623 (1 HSPs)
scaffold0623 (148-202)||(5964-6018)
[»] scaffold0450 (1 HSPs)
scaffold0450 (147-189)||(8602-8644)
[»] scaffold0044 (1 HSPs)
scaffold0044 (148-202)||(53217-53271)
[»] chr1 (3 HSPs)
chr1 (148-202)||(17408728-17408782)
chr1 (153-202)||(34371750-34371799)
chr1 (150-202)||(30173732-30173784)
[»] scaffold0136 (1 HSPs)
scaffold0136 (149-202)||(3818-3871)


Alignment Details
Target: scaffold0004 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 83400 - 83197
Alignment:
Q  1 ggccaccttgtctgcagtagttgtcatggtttctagccatgaaaaagctagcttcttcactgtttcctttgaagcaaaatataccaactctcctgccttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  83400 ggccaccttgtctgcagtagttgtcatggtttctagccatgaaaaagctagctttttcactgtttcctttgaagcaaaatataccaactctcctgccttc 83301  T
Q  101 aagtaagtgaactccttggattaggcgtgttctggtgctggacacgagtgtcggacacg--tgtcgtgtccgataccaatacgacaccgacgcttataat 198  Q
    |||||||||||||||| ||||||||||||| | |||| |||| ||||||||||||||||     ||||||||||| |||||||||||||||  || ||||    
T  83300 aagtaagtgaactcctcggattaggcgtgtcccggtgttggatacgagtgtcggacacgacacacgtgtccgatatcaatacgacaccgacatttgtaat 83201  T
Q  199 taca 202  Q
    ||||    
T  83200 taca 83197  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 8365486 - 8365541
Alignment:
Q  147 agtgtcggacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    ||||||||||||||||||||||||||||| | ||||||||||| ||| ||||||||    
T  8365486 agtgtcggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattaca 8365541  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 10294195 - 10294144
Alignment:
Q  151 tcggacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    |||||||| |||||||||||| ||||| ||||||||||| | ||||||||||    
T  10294195 tcggacacatgtcgtgtccgacaccaacacgacaccgacacatataattaca 10294144  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 16766788 - 16766734
Alignment:
Q  148 gtgtcggacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    ||||||||||||||| |||||||| ||| | ||||||||||| ||| ||||||||    
T  16766788 gtgtcggacacgtgttgtgtccgacaccgacacgacaccgacacttgtaattaca 16766734  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 16488564 - 16488612
Alignment:
Q  154 gacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    |||||||||||||||||| ||| | ||||||||||| | ||||||||||    
T  16488564 gacacgtgtcgtgtccgacaccgacacgacaccgacacatataattaca 16488612  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 41961617 - 41961672
Alignment:
Q  147 agtgtcggacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    ||||||||||||||||||||||||||||| | ||||||||||| ||| ||||||||    
T  41961617 agtgtcggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattaca 41961672  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 14832190 - 14832136
Alignment:
Q  148 gtgtcggacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    |||||||||||||||||||||||||||| | ||||||| ||| ||| ||||||||    
T  14832190 gtgtcggacacgtgtcgtgtccgataccgacacgacactgacacttgtaattaca 14832136  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 750590 - 750637
Alignment:
Q  152 cggacacgtgtcgtgtccgataccaatacgacaccgacgcttataatt 199  Q
    |||||||||||||||||||||||| | ||||||||||| ||| |||||    
T  750590 cggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaatt 750637  T

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Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 241685 - 241631
Alignment:
Q  148 gtgtcggacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    |||||||||||||||||||||||| ||||| ||||||||||| || |||||||||    
T  241685 gtgtcggacacgtgtcgtgtccgacaccaacacgacaccgacactcataattaca 241631  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 25822745 - 25822692
Alignment:
Q  149 tgtcggacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    |||| |||||||||||||||||||||| ||||||||||||| ||| ||||||||    
T  25822745 tgtcagacacgtgtcgtgtccgataccgatacgacaccgacacttgtaattaca 25822692  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 24339733 - 24339679
Alignment:
Q  148 gtgtcggacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    |||||||| ||||||||||||||| ||| | ||||||||||| ||| ||||||||    
T  24339733 gtgtcggatacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattaca 24339679  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 30183641 - 30183588
Alignment:
Q  147 agtgtcggacacgtgtcgtgtccgataccaatacgacaccgacgcttataatta 200  Q
    |||||||||||||||||||||| |||||||| ||||||||||| ||| ||||||    
T  30183641 agtgtcggacacgtgtcgtgtctgataccaacacgacaccgacacttgtaatta 30183588  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 21542121 - 21542067
Alignment:
Q  148 gtgtcggacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    |||||||||||||||||||||||| ||| | ||||||||||| ||| ||||||||    
T  21542121 gtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattaca 21542067  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 36642730 - 36642784
Alignment:
Q  148 gtgtcggacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    |||||||||||||||||||||||| ||||| | ||||||||| |||||| |||||    
T  36642730 gtgtcggacacgtgtcgtgtccgacaccaacatgacaccgacacttatatttaca 36642784  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 21814346 - 21814298
Alignment:
Q  154 gacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    |||||||||||||||||| ||| | ||||||||||| | ||||||||||    
T  21814346 gacacgtgtcgtgtccgacaccgacacgacaccgacacatataattaca 21814298  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 26769603 - 26769548
Alignment:
Q  147 agtgtcggacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    ||||||||||||||||||||||||||||| | | ||||||||| ||| ||||||||    
T  26769603 agtgtcggacacgtgtcgtgtccgataccgacatgacaccgacacttgtaattaca 26769548  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 35056959 - 35056905
Alignment:
Q  148 gtgtcggacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    |||||||||||||||||||||||| ||| | ||||||||||| | ||||||||||    
T  35056959 gtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacatataattaca 35056905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 34784950 - 34785004
Alignment:
Q  148 gtgtcggacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    ||||| |||| ||||||||||||||||| | ||||||||||| | ||||||||||    
T  34784950 gtgtcagacaggtgtcgtgtccgataccgacacgacaccgacacatataattaca 34785004  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 44860410 - 44860357
Alignment:
Q  149 tgtcggacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    |||||||||| |||||||||| | ||||| ||||||||||| | ||||||||||    
T  44860410 tgtcggacacatgtcgtgtccaacaccaacacgacaccgacacatataattaca 44860357  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 15816097 - 15816151
Alignment:
Q  148 gtgtcggacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    ||||||||  |||||||||||||| ||||| ||||||||||| ||||||||||||    
T  15816097 gtgtcggattcgtgtcgtgtccgacaccaacacgacaccgacacttataattaca 15816151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 22652067 - 22652015
Alignment:
Q  148 gtgtcggacacgtgtcgtgtccgataccaatacgacaccgacgcttataatta 200  Q
    ||||||||||| |||||||||||| ||| | ||||||||||| ||| ||||||    
T  22652067 gtgtcggacacatgtcgtgtccgacaccgacacgacaccgacacttgtaatta 22652015  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 26902149 - 26902197
Alignment:
Q  154 gacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    |||||||||||||||||| ||  ||||||||||||| | ||||||||||    
T  26902149 gacacgtgtcgtgtccgacactcatacgacaccgacacatataattaca 26902197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 30982846 - 30982900
Alignment:
Q  148 gtgtcggacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    ||||||||||||||||||||| || ||| | ||||||||||| ||||||||||||    
T  30982846 gtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattaca 30982900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 19482760 - 19482705
Alignment:
Q  147 agtgtcggacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    ||||||||||||||||||||||| ||||| | |||||||| || ||| ||||||||    
T  19482760 agtgtcggacacgtgtcgtgtccaataccgacacgacaccaacacttgtaattaca 19482705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 46083965 - 46084013
Alignment:
Q  154 gacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    |||||||||||||||||||||  | ||||||||||| | ||||||||||    
T  46083965 gacacgtgtcgtgtccgatactgacacgacaccgacacatataattaca 46084013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 17847 - 17902
Alignment:
Q  147 agtgtcggacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    ||||||||||||||||||||||| | ||| ||||||||||| | | ||||||||||    
T  17847 agtgtcggacacgtgtcgtgtccaacaccgatacgacaccgtcacatataattaca 17902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 5964 - 6018
Alignment:
Q  148 gtgtcggacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    ||||| |||||||||||||| ||| ||| ||||||||||||| | ||||||||||    
T  5964 gtgtcagacacgtgtcgtgttcgacaccgatacgacaccgacacatataattaca 6018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 8602 - 8644
Alignment:
Q  147 agtgtcggacacgtgtcgtgtccgataccaatacgacaccgac 189  Q
    |||||||||||||| |||||||||||||| | |||||||||||    
T  8602 agtgtcggacacgtatcgtgtccgataccgacacgacaccgac 8644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 53271 - 53217
Alignment:
Q  148 gtgtcggacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    |||||||||||||||| ||||||| ||| | ||| ||||||| ||||||||||||    
T  53271 gtgtcggacacgtgtcatgtccgacaccgacacggcaccgacacttataattaca 53217  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 17408782 - 17408728
Alignment:
Q  148 gtgtcggacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    ||||||||||||||||||||| |||||||| || ||||||||   ||||||||||    
T  17408782 gtgtcggacacgtgtcgtgtctgataccaacacaacaccgacatatataattaca 17408728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 34371799 - 34371750
Alignment:
Q  153 ggacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    ||||||||||||| ||||| ||||| ||||||||||| | ||||||||||    
T  34371799 ggacacgtgtcgtatccgacaccaacacgacaccgacacatataattaca 34371750  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 30173732 - 30173784
Alignment:
Q  150 gtcggacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    |||||||| ||||||||||||||||  | ||||||||||| ||| ||||||||    
T  30173732 gtcggacatgtgtcgtgtccgatacggacacgacaccgacacttgtaattaca 30173784  T

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Target: scaffold0136 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 3818 - 3871
Alignment:
Q  149 tgtcggacacgtgtcgtgtccgataccaatacgacaccgacgcttataattaca 202  Q
    ||||||||| ||||||||||||| ||||| ||||||| ||| ||| ||||||||    
T  3818 tgtcggacatgtgtcgtgtccgacaccaacacgacactgacacttgtaattaca 3871  T

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