View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17351_low_6 (Length: 565)
Name: NF17351_low_6
Description: NF17351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17351_low_6 |
 |  |
|
| [»] scaffold0400 (2 HSPs) |
 |  |  |
|
| [»] scaffold0365 (2 HSPs) |
 |  |  |
|
| [»] scaffold0289 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 548
Target Start/End: Complemental strand, 15016936 - 15016406
Alignment:
| Q |
18 |
caatgcagttaattcgtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15016936 |
caatgcagttaattcgtgcaatgattcaatttgttcaggaacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttct |
15016837 |
T |
 |
| Q |
118 |
agctcctttggaattttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15016836 |
agctcctttggaattttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaat |
15016737 |
T |
 |
| Q |
218 |
tattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtccaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||||||||| |
|
|
| T |
15016736 |
tattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaatttgaccatacaaattattatcactcaattccatgtagtccaa |
15016637 |
T |
 |
| Q |
318 |
gtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaattcttcaaactctcttga |
417 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||| ||||||||||||||||||||| || |
|
|
| T |
15016636 |
gtttggatacacaccaaaactatttgttatatttccagtcagttggttttgttcaagcctcagtctcttaaggcttgagcaattcttcaaactctctgga |
15016537 |
T |
 |
| Q |
418 |
actaggcctgtgaactggttaagtgctgcagtgaatcgtctcaacttcccaccgacacaaatattttgaggtaaatgaccaacaaaattattatcatata |
517 |
Q |
| |
|
||||||||||||||||||||||| || |||| |||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
15016536 |
actaggcctgtgaactggttaagagcagcagagaatttttccaacttcccaccgacacaaatattatgaggtaaatgaccaacaaaattattatcataca |
15016437 |
T |
 |
| Q |
518 |
aatggagtgcttccaaatcggtaagcctatt |
548 |
Q |
| |
|
||| |||||||| |||||||||||||||||| |
|
|
| T |
15016436 |
aatcgagtgctttcaaatcggtaagcctatt |
15016406 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 551
Target Start/End: Complemental strand, 15024938 - 15024405
Alignment:
| Q |
18 |
caatgcagttaattcgtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttct |
117 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15024938 |
caatgcagttagctcgtgcaatgatgcaatttgtacaggaacttctccagaaaggtgattgttacttaacgagagtttgatcaacaaagataagttttct |
15024839 |
T |
 |
| Q |
118 |
agctcctttggaattttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaat |
217 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||||||| |||||||| |||| |
|
|
| T |
15024838 |
agctcctttggaatttttcccgttagatggtttgaagacaagttaagctcctgtaaatttgttgcgctgcctagctctggtggtattcttcctgttaaat |
15024739 |
T |
 |
| Q |
218 |
tattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtccaa |
317 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||| |
|
|
| T |
15024738 |
tattaccagagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcattcaagtccatgtagtacaa |
15024639 |
T |
 |
| Q |
318 |
gtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaattcttcaaactctcttga |
417 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| ||||||||| |||||||| |||||||||||||||||||| || |
|
|
| T |
15024638 |
gtttggatacacaccaaaactatttgttatatttccagtcagttggttttgatcaagcctcactcttttaaggcttaagcaattcttcaaactctctgga |
15024539 |
T |
 |
| Q |
418 |
actaggcctgtgaactggttaagtgctgcagtgaatcgtctcaacttcccaccgacacaaatattttgaggtaaatgaccaacaaaattattatcatata |
517 |
Q |
| |
|
|||| ||| ||||||||||||||| | ||||||||| | | | ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| || |
|
|
| T |
15024538 |
actaagccagtgaactggttaagtccagcagtgaatttttttatcttcccaccgacacaaatattgtgaggtaaatgaccaacaaaattattaacatcta |
15024439 |
T |
 |
| Q |
518 |
aatggagtgcttccaaatcggtaagcctattcat |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
15024438 |
aatggagtgcttccaaatcggtaagcctattcat |
15024405 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 551
Target Start/End: Complemental strand, 15032279 - 15031746
Alignment:
| Q |
18 |
caatgcagttaattcgtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttct |
117 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15032279 |
caatgcagttagctcgtgcaatgatgcaatttgtacaggaacttctccagaaaggtgattgttacttaacgagagtttgatcaacaaagataagttttct |
15032180 |
T |
 |
| Q |
118 |
agctcctttggaattttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaat |
217 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||||||| |||||||| |||| |
|
|
| T |
15032179 |
agctcctttggaatttttcccgttagatggtttgaagacaagttaagctcctgtaaatttgttgcgctgcctagctctggtggtattcttcctgttaaat |
15032080 |
T |
 |
| Q |
218 |
tattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtccaa |
317 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||| |
|
|
| T |
15032079 |
tattaccagagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcattcaagtccatgtagtacaa |
15031980 |
T |
 |
| Q |
318 |
gtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaattcttcaaactctcttga |
417 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| ||||||||| |||||||| |||||||||||||||||||| || |
|
|
| T |
15031979 |
gtttggatacacaccaaaactatttgttatatttccagtcagttggttttgatcaagcctcactcttttaaggcttaagcaattcttcaaactctctgga |
15031880 |
T |
 |
| Q |
418 |
actaggcctgtgaactggttaagtgctgcagtgaatcgtctcaacttcccaccgacacaaatattttgaggtaaatgaccaacaaaattattatcatata |
517 |
Q |
| |
|
|||| ||| ||||||||||||||| | ||||||||| | | | ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| || |
|
|
| T |
15031879 |
actaagccagtgaactggttaagtccagcagtgaatttttttatcttcccaccgacacaaatattgtgaggtaaatgaccaacaaaattattaacatcta |
15031780 |
T |
 |
| Q |
518 |
aatggagtgcttccaaatcggtaagcctattcat |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
15031779 |
aatggagtgcttccaaatcggtaagcctattcat |
15031746 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 551
Target Start/End: Complemental strand, 15001928 - 15001395
Alignment:
| Q |
18 |
caatgcagttaattcgtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttct |
117 |
Q |
| |
|
||||||||||| || ||||||||| ||||||| | || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15001928 |
caatgcagttagttgatgcaatgatgcaatttgtactggaacttctccataaagatgattgttacttaacgagagtttgatcaacaaagataagttttct |
15001829 |
T |
 |
| Q |
118 |
agctcctttggaattttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaat |
217 |
Q |
| |
|
| ||||||||||||||| | | | ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15001828 |
aactcctttggaatttttcgcattagatggtttgaagacaagttaagctcctgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaat |
15001729 |
T |
 |
| Q |
218 |
tattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtccaa |
317 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |
|
|
| T |
15001728 |
tattgttggagatttttaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcactcaaatccatgtattccaa |
15001629 |
T |
 |
| Q |
318 |
gtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaattcttcaaactctcttga |
417 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||| ||||||||||| || ||||||||| ||||||| ||||||||||||||||||||| || |
|
|
| T |
15001628 |
atttggatacacaccaaagctgtctgttatatttccagtcagttggttttgttgaagtctcactctcgtaaggcttgagcaattcttcaaactctctgga |
15001529 |
T |
 |
| Q |
418 |
actaggcctgtgaactggttaagtgctgcagtgaatcgtctcaacttcccaccgacacaaatattttgaggtaaatgaccaacaaaattattatcatata |
517 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| | | |||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
15001528 |
actaggcctgtgaactggttaagtgcaacagtgaacatttttaacttcccaccgttacaaatattgtgaggtaaatgaccaacaaaattattatcagata |
15001429 |
T |
 |
| Q |
518 |
aatggagtgcttccaaatcggtaagcctattcat |
551 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||| |
|
|
| T |
15001428 |
aatggagtacttccaaatctgtaagcctattcat |
15001395 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 551
Target Start/End: Complemental strand, 15036841 - 15036308
Alignment:
| Q |
18 |
caatgcagttaattcgtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttct |
117 |
Q |
| |
|
||||||||||| || ||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| | || | |
|
|
| T |
15036841 |
caatgcagttagttgatgcaatgatgcaatttgtacaggaacttctccagaaagatgattgttacttaacgagagtttgaacaacaaagataaatatttt |
15036742 |
T |
 |
| Q |
118 |
agctcctttggaattttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaat |
217 |
Q |
| |
|
||||||||||||||||| ||| | |||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| || |||| |
|
|
| T |
15036741 |
agctcctttggaatttttcccattagatcgtttgaagacaagttaagctcctgtaaatttgttgctctgcctagttctggtggtattcttccagttaaat |
15036642 |
T |
 |
| Q |
218 |
tattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtccaa |
317 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15036641 |
tattaccggagatttttaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcactcaagtccatgtagtccaa |
15036542 |
T |
 |
| Q |
318 |
gtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaattcttcaaactctcttga |
417 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||||||| | || ||||| ||||| |||||| ||||||||||||||||||||| || |
|
|
| T |
15036541 |
gtttggatacacaccaaaactctctgttatatttccagtcagttggttttggttaagcctcaatctctcaaggcttgagcaattcttcaaactctctgga |
15036442 |
T |
 |
| Q |
418 |
actaggcctgtgaactggttaagtgctgcagtgaatcgtctcaacttcccaccgacacaaatattttgaggtaaatgaccaacaaaattattatcatata |
517 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||| | | ||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |
|
|
| T |
15036441 |
actaggcctctgaactggttaagtgcagcagtgaatgtttttaacttcccaccgacacaaatattgtgaggtaaatgaccaataaatttattatcatata |
15036342 |
T |
 |
| Q |
518 |
aatggagtgcttccaaatcggtaagcctattcat |
551 |
Q |
| |
|
| | |||| |||||||||| |||||||||||||| |
|
|
| T |
15036341 |
attcgagtacttccaaatccgtaagcctattcat |
15036308 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 551
Target Start/End: Complemental strand, 15010821 - 15010288
Alignment:
| Q |
18 |
caatgcagttaattcgtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttct |
117 |
Q |
| |
|
||||||||||| || ||||||||| ||||||| |||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||| |
|
|
| T |
15010821 |
caatgcagttagttgatgcaatgatgcaatttgtacaggaacttctccagaaagatgattgttacttaaggagagtttgaacaacaaagataagtattct |
15010722 |
T |
 |
| Q |
118 |
agctcctttggaattttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaat |
217 |
Q |
| |
|
| ||||||||||||||| ||| | ||||||||||||||||||||||| || |||||||||||||| || ||||||||||||||||| |||||||| |||| |
|
|
| T |
15010721 |
aactcctttggaatttttcccattagatggtttgaagacaagttaagctcctgtaaatttgttgcacttcctagttctggtggtattcttcctgttaaat |
15010622 |
T |
 |
| Q |
218 |
tattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtccaa |
317 |
Q |
| |
|
|||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
15010621 |
tattaccagagatttttaggcttgtgagaatcttgcactttccccaatttggagaaagatgaccataaaaattattatcactcaattccatgtagtccaa |
15010522 |
T |
 |
| Q |
318 |
gtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaattcttcaaactctcttga |
417 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| | ||||||||| |||| ||||| |||| ||||||| ||||||||||||||||||||| || |
|
|
| T |
15010521 |
gtttggatacacaccaaaactctctgttatatttccagtaagttggttttgatcaagcctcagtctcgtaaggcttgagcaattcttcaaactctctgga |
15010422 |
T |
 |
| Q |
418 |
actaggcctgtgaactggttaagtgctgcagtgaatcgtctcaacttcccaccgacacaaatattttgaggtaaatgaccaacaaaattattatcatata |
517 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| | | ||||||||||| ||||||||||| ||||||||||||||||||||| |||||||| ||| |
|
|
| T |
15010421 |
actaggcctgtgaactggttaagtgcagcagtgaatgtttttaacttcccaccaacacaaatattgtgaggtaaatgaccaacaaaaatattatcagata |
15010322 |
T |
 |
| Q |
518 |
aatggagtgcttccaaatcggtaagcctattcat |
551 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| |
|
|
| T |
15010321 |
aatggagtacttccaaatcgataagcctattcat |
15010288 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 34 - 438
Target Start/End: Complemental strand, 14467608 - 14467204
Alignment:
| Q |
34 |
tgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaattt |
133 |
Q |
| |
|
||||||||| ||| ||| |||| |||||||| ||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14467608 |
tgcaatgatgcaacttgtgcaggaacttctcctgaaagatgattgttacttaccgagagttggatcaacaaagataagctttctagctcctttggaattt |
14467509 |
T |
 |
| Q |
134 |
tccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaattattgttggagatttt |
233 |
Q |
| |
|
| |||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| || ||| ||||||| |
|
|
| T |
14467508 |
ttcccgtaagatggtttgaagacaggtttagttcatgtaaatttgttgctcggcctagttctggcggtatgcttcctgttaaattgttattgaagatttt |
14467409 |
T |
 |
| Q |
234 |
aaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtccaagtttggatacacacca |
333 |
Q |
| |
|
||||| |||||||||| |||| ||||||||||| || || ||||| ||||| |||||||||||||| || |||||||||||||| ||||||| ||| ||| |
|
|
| T |
14467408 |
aaggcatgtgagattcatgcattttccccaattcggtgatagatggccatacaaattattatcactcaattccatgtagtccaattttggatgcacgcca |
14467309 |
T |
 |
| Q |
334 |
aaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaattcttcaaactctcttgaactaggcctgtgaact |
433 |
Q |
| |
|
|| ||| |||||||| |||| | ||| ||||||| || ||| ||||| | |||||| ||||| ||||||||||||| | ||| | |||||||||| | |
|
|
| T |
14467308 |
aaggcatcagttatattgtcagttagttgattttgttgaagccttactctataaaggctagagcagttcttcaaactctttggaattgggcctgtgaatt |
14467209 |
T |
 |
| Q |
434 |
ggtta |
438 |
Q |
| |
|
||||| |
|
|
| T |
14467208 |
ggtta |
14467204 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 34 - 518
Target Start/End: Complemental strand, 14503787 - 14503303
Alignment:
| Q |
34 |
tgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaattt |
133 |
Q |
| |
|
||||||||| ||||||| ||| || ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||| ||||||||||||| |
|
|
| T |
14503787 |
tgcaatgatgcaatttgtataggaacctctccagaaagatgattgttacttatcgagagtttgatcaacaaagacaagtttcctagatcctttggaattt |
14503688 |
T |
 |
| Q |
134 |
tccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttg-ctctgcctagttctggtggtatgcttcctgtcaaattattgttggagattt |
232 |
Q |
| |
|
| || |||||||||||||| ||||||||||||||||||||||| ||| ||| ||| | |||| ||||||| ||||||| ||||| || |||||||||| |
|
|
| T |
14503687 |
ttccagtaagatggtttgatgacaagttaagttcatgtaaattaattgtctcagccaa-ttcttgtggtatatttcctgttaaattgttattggagattt |
14503589 |
T |
 |
| Q |
233 |
taaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtccaagtttggatacacacc |
332 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| || ||||| ||||| |||||||| ||||| || |||||||||||||| | |||||| ||||| |
|
|
| T |
14503588 |
taaggcttgtgagactcttgcactttccccaatttggtgatagatggccatacaaattattttcactcaattccatgtagtccaaatgtggataaacacc |
14503489 |
T |
 |
| Q |
333 |
aaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaattcttcaaactctcttgaactaggcctgtgaac |
432 |
Q |
| |
|
||||| |||||||||||||||||| ||||| |||| || || ||| ||||| ||||||||||||||||||| ||||||| | ||| | | |||||||| |
|
|
| T |
14503488 |
aaaaccatctgttatatttccagttaattgatttttttgaagcctaactctaataaggctggagcaattctttaaactctttggaattggccctgtgaat |
14503389 |
T |
 |
| Q |
433 |
tggttaagtgct-gcagtgaatcgtctcaacttcccaccgacacaaatattttgaggtaaatgaccaacaaaattattatcatataa |
518 |
Q |
| |
|
||||| | | || |||||||| | ||||| | ||||| |||||||| || ||||||||||| || | |||||||||||| |||| |
|
|
| T |
14503388 |
tggtt-attactagcagtgaaatttgtcaacattccaccaacacaaatgttgtgaggtaaatggcctatgaaattattatcagataa |
14503303 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 14522915 - 14523311
Alignment:
| Q |
18 |
caatgcagttaattcgtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttct |
117 |
Q |
| |
|
||||| ||||| ||| ||||||||| |||| ||| ||| |||||||| ||||||||||| ||||||| |||||||| ||||| |||||||||| || |
|
|
| T |
14522915 |
caatgtagttagttcatgcaatgatgcaatctgcataggaacttctcccgaaagatgattattacttatcgagagttggatcagtgcagataagtttcct |
14523014 |
T |
 |
| Q |
118 |
agctcctttggaattttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgct-ctgcctagttctggtggtatgcttcctgtcaaa |
216 |
Q |
| |
|
|| |||||||||||||| || |||| || ||||| ||||||| |||| ||||||||| |||||| | ||| | ||||||||||||||||||| | ||| |
|
|
| T |
14523015 |
agatcctttggaatttttcctataagttgatttgaggacaagtcaagtatatgtaaattggttgcttcagccaa-ttctggtggtatgcttcctattaaa |
14523113 |
T |
 |
| Q |
217 |
ttattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtcca |
316 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| || |||||||||| |
|
|
| T |
14523114 |
ttattattggagattttaaggcttgtcagattcttgcacttcccccaatttggagaaagataaccataaaaattattatcacttaattctatgtagtcca |
14523213 |
T |
 |
| Q |
317 |
agtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaattcttcaaactctct |
414 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||| || |||||| | || |||| ||| ||||||| || || ||||||||||||||| |
|
|
| T |
14523214 |
aatttggatacacaccaaaactatctgttatatttcctgtcattttgttttggttaagtctcaatcttataaggctagaacagttcttcaaactctct |
14523311 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 34 - 438
Target Start/End: Original strand, 14533052 - 14533456
Alignment:
| Q |
34 |
tgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaattt |
133 |
Q |
| |
|
|||| |||| ||||||| |||| |||||||| |||||| ||||||| ||| |||||||||||| ||||||||||||||| ||||||||| |||||||| |
|
|
| T |
14533052 |
tgcagtgatgcaatttgtacaggaacttctcccaaaagattattgttatttatcgagagtttgattaacaaagataagtttcctagctcctctggaattt |
14533151 |
T |
 |
| Q |
134 |
tccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaattattgttggagatttt |
233 |
Q |
| |
|
| || ||||||||||||||||||| |||||||| ||||| | |||||||| ||||||||| | ||||||||||| || ||||||||||||||||||| |
|
|
| T |
14533152 |
ttccagtaagatggtttgaagacagattaagttcttgtaattgtgttgctccacctagttcttgaggtatgcttccagttaaattattgttggagatttg |
14533251 |
T |
 |
| Q |
234 |
aaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtccaagtttggatacacacca |
333 |
Q |
| |
|
||| |||||||| ||||||||||| ||||||||||| || | ||| |||||||||||||||||||| || |||||||||||||| ||||||||||| ||| |
|
|
| T |
14533252 |
aagacttgtgagtttcttgcacttaccccaatttggtgatatatggccataaaaattattatcactcaattccatgtagtccaaatttggatacacgcca |
14533351 |
T |
 |
| Q |
334 |
aaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaattcttcaaactctcttgaactaggcctgtgaact |
433 |
Q |
| |
|
|| ||| |||||||| |||| | ||| ||||||| || || ||||| |||| |||||||| ||||||||||||| | ||| | |||||||||| | |
|
|
| T |
14533352 |
aaggcatcagttatattgtcagttatttgattttgttgaagtcttactctgataagactggagcacttcttcaaactctttggaattgggcctgtgaatt |
14533451 |
T |
 |
| Q |
434 |
ggtta |
438 |
Q |
| |
|
||||| |
|
|
| T |
14533452 |
ggtta |
14533456 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 192 - 434
Target Start/End: Complemental strand, 15040403 - 15040161
Alignment:
| Q |
192 |
ttctggtggtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaatta |
291 |
Q |
| |
|
|||| ||||||| || ||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||| || |||| ||| ||| || | ||| |
|
|
| T |
15040403 |
ttctagtggtatactccctgttaaattattgttggagattttaaggcttatgagattcttgcgttttccccaattaggtgaaatatggccaaaatattta |
15040304 |
T |
 |
| Q |
292 |
ttatcacttaagtccatgtagtccaagtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggc |
391 |
Q |
| |
|
||| |||| || |||||||||| |||||||||| |||||||||| ||||||||||||||||||| | |||||||||||||| ||||||||||| || | |
|
|
| T |
15040303 |
ttaccactcaattccatgtagtacaagtttggacacacaccaaagctatctgttatatttccagcaagttggttttgttcaagtctcactctctttagac |
15040204 |
T |
 |
| Q |
392 |
tggagcaattcttcaaactctcttgaactaggcctgtgaactg |
434 |
Q |
| |
|
| || |||||||||||||||| | ||| | | ||||||||||| |
|
|
| T |
15040203 |
ttgaacaattcttcaaactctttggaattggacctgtgaactg |
15040161 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 34 - 411
Target Start/End: Complemental strand, 12584 - 12207
Alignment:
| Q |
34 |
tgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaattt |
133 |
Q |
| |
|
|||| |||| ||||||| |||| |||||||| |||||| ||||||| ||| |||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
12584 |
tgcagtgatgcaatttgtacaggaacttctcccaaaagattattgttatttatcgagagtttgattaacaaagataagtttcctagctcctttggaattt |
12485 |
T |
 |
| Q |
134 |
tccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaattattgttggagatttt |
233 |
Q |
| |
|
| || ||||||||||||||||||| |||||||| ||||| | |||||||| ||||||||| | ||||||||||| || ||||||||||||||||||| |
|
|
| T |
12484 |
ttccagtaagatggtttgaagacagattaagttcttgtaattgtgttgctccacctagttcttgcggtatgcttccagttaaattattgttggagatttg |
12385 |
T |
 |
| Q |
234 |
aaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtccaagtttggatacacacca |
333 |
Q |
| |
|
||| |||||||| ||||||||||| ||||||||||| || | ||| ||||||||||||||||||||||| ||||||||| |||| | |||||| |||||| |
|
|
| T |
12384 |
aagacttgtgagtttcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacacca |
12285 |
T |
 |
| Q |
334 |
aaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaattcttcaaactc |
411 |
Q |
| |
|
|||| |||||||||||||||||| ||||| |||| || || ||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
12284 |
aaaccatctgttatatttccagttaattgatttttttgaagcctaactctaataaggctggagcaattcttcaaactc |
12207 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 34 - 438
Target Start/End: Complemental strand, 6296 - 5892
Alignment:
| Q |
34 |
tgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaattt |
133 |
Q |
| |
|
|||||| || ||||||| ||||| |||||||| |||||||||| |||||| | |||| | |||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
6296 |
tgcaataatgcaatttgttcaggaacttctcctacaagatgattgctacttatcaagagctggatcaatgaggataagtttcctagctcctttggaattt |
6197 |
T |
 |
| Q |
134 |
tccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaattattgttggagatttt |
233 |
Q |
| |
|
|| || || || || || || | || ||| | |||||| |||||| | | | ||| |||||||||||||||| | |||||| ||| | | ||| |
|
|
| T |
6196 |
ctcctgtgagttgattcgaggaaaggtccagtatagttaaattggttgcttcggccaattcgggtggtatgcttcctgatatattattattgaaaacttt |
6097 |
T |
 |
| Q |
234 |
aaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtccaagtttggatacacacca |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| || ||||| || |||||||||||| |
|
|
| T |
6096 |
aaggcttgtgagattcttgcactttccccaatttggagagagatgaccataaaaattattatcactcaattccatatattccaaattcggatacacacca |
5997 |
T |
 |
| Q |
334 |
aaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaattcttcaaactctcttgaactaggcctgtgaact |
433 |
Q |
| |
|
|| ||||||||||||||| |||||| ||||||||||| || ||||||||||||||||| |||||||| || ||||||| | ||||||| || |||||| |
|
|
| T |
5996 |
aagctatctgttatatttgcagtcagttggttttgttgaagtctcactctcttaaggcttgagcaattttttaaactctttggaactagaccaatgaact |
5897 |
T |
 |
| Q |
434 |
ggtta |
438 |
Q |
| |
|
||||| |
|
|
| T |
5896 |
ggtta |
5892 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 34 - 411
Target Start/End: Complemental strand, 13227 - 12850
Alignment:
| Q |
34 |
tgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaattt |
133 |
Q |
| |
|
|||| |||| ||||||| |||| |||||||| |||||| ||||||| ||| |||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
13227 |
tgcagtgatgcaatttgtacaggaacttctcccaaaagattattgttatttatcgagagtttgattaacaaagataagtttcctagctcctttggaattt |
13128 |
T |
 |
| Q |
134 |
tccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaattattgttggagatttt |
233 |
Q |
| |
|
| || ||||||||||||||||||| |||||||| ||||| | |||||||| ||||||||| | ||||||||||| || ||||||||||||||||||| |
|
|
| T |
13127 |
ttccagtaagatggtttgaagacagattaagttcttgtaattgtgttgctccacctagttcttgcggtatgcttccagttaaattattgttggagatttg |
13028 |
T |
 |
| Q |
234 |
aaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtccaagtttggatacacacca |
333 |
Q |
| |
|
||| |||||||| ||||||||||| ||||||||||| || | ||| ||||||||||||||||||||||| ||||||||| |||| | |||||| |||||| |
|
|
| T |
13027 |
aagacttgtgagtttcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacacca |
12928 |
T |
 |
| Q |
334 |
aaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaattcttcaaactc |
411 |
Q |
| |
|
|||| |||||||||||||||||| ||||| |||| || || ||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
12927 |
aaaccatctgttatatttccagttaattgatttttttgaagcctaactctaataaggctggagcaattcttcaaactc |
12850 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 34 - 438
Target Start/End: Complemental strand, 6940 - 6536
Alignment:
| Q |
34 |
tgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaattt |
133 |
Q |
| |
|
|||||| || ||||||| ||||| |||||||| |||||||||| |||||| | |||| | |||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
6940 |
tgcaataatgcaatttgttcaggaacttctcctacaagatgattgctacttatcaagagctggatcaatgaggataagtttcctagctcctttggaattt |
6841 |
T |
 |
| Q |
134 |
tccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaattattgttggagatttt |
233 |
Q |
| |
|
|| || || || || || || | || ||| | |||||| |||||| | | | ||| |||||||||||||||| | |||||| ||| | | ||| |
|
|
| T |
6840 |
ctcctgtgagttgattcgaggaaaggtccagtatagttaaattggttgcttcggccaattcgggtggtatgcttcctgatatattattattgaaaacttt |
6741 |
T |
 |
| Q |
234 |
aaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtccaagtttggatacacacca |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| || ||||| || |||||||||||| |
|
|
| T |
6740 |
aaggcttgtgagattcttgcactttccccaatttggagagagatgaccataaaaattattatcactcaattccatatattccaaattcggatacacacca |
6641 |
T |
 |
| Q |
334 |
aaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaattcttcaaactctcttgaactaggcctgtgaact |
433 |
Q |
| |
|
|| ||||||||||||||| |||||| ||||||||||| || ||||||||||||||||| |||||||| || ||||||| | ||||||| || |||||| |
|
|
| T |
6640 |
aagctatctgttatatttgcagtcagttggttttgttgaagtctcactctcttaaggcttgagcaattttttaaactctttggaactagaccaatgaact |
6541 |
T |
 |
| Q |
434 |
ggtta |
438 |
Q |
| |
|
||||| |
|
|
| T |
6540 |
ggtta |
6536 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 438
Target Start/End: Complemental strand, 16102601 - 16102283
Alignment:
| Q |
120 |
ctcctttggaattttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaatta |
219 |
Q |
| |
|
|||||| ||||||||||| || |||||||||||||| |||| |||| | ||||| | ||| || |||| |||||||||||| |||| | |||| |
|
|
| T |
16102601 |
ctccttcggaattttccctgtgagatggtttgaagataagtcaagtatacccaaattgggtgcccttcctatttctggtggtatatgacctgatatatta |
16102502 |
T |
 |
| Q |
220 |
ttgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtccaagt |
319 |
Q |
| |
|
|| | ||| ||| | | |||||| || || | |||||||||||||| | ||||| || || |||||||| || ||||||||||| ||||| | ||| | |
|
|
| T |
16102501 |
ttatgggaaattatgaagcttgttaggttttgacactttccccaattcgatgaaaggtgtccgtaaaaattgttttcacttaagtctatgtaattcaaat |
16102402 |
T |
 |
| Q |
320 |
ttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaattcttcaaactctcttgaac |
419 |
Q |
| |
|
||||||| |||| |||| | ||||||||||||||| | ||||||||| |||| || | ||| ||| ||| ||||||||||||||||||| |||| |
|
|
| T |
16102401 |
ttggataaacactaaaatcttgtgttatatttccagtaagttggttttggtcaagtctaagtcttataatgctagagcaattcttcaaactcttaggaac |
16102302 |
T |
 |
| Q |
420 |
taggcctgtgaactggtta |
438 |
Q |
| |
|
| |||| ||||| |||||| |
|
|
| T |
16102301 |
tcggccggtgaagtggtta |
16102283 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 438
Target Start/End: Complemental strand, 16172279 - 16171961
Alignment:
| Q |
120 |
ctcctttggaattttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaatta |
219 |
Q |
| |
|
|||||| ||||||||||| || |||||||||||||| |||| |||| | ||||| | ||| || |||| |||||||||||| |||| | |||| |
|
|
| T |
16172279 |
ctccttcggaattttccctgtgagatggtttgaagataagtcaagtatacccaaattggatgcccttcctatttctggtggtatatgacctgatatatta |
16172180 |
T |
 |
| Q |
220 |
ttgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtccaagt |
319 |
Q |
| |
|
|| | ||| ||| | | |||||| || || | |||||||||||||| | ||||| || || |||||||| || ||||||||||| ||||| | ||| | |
|
|
| T |
16172179 |
ttatgggaaattatgaagcttgttaggttttgacactttccccaattcgatgaaaggtgtccgtaaaaattgttttcacttaagtctatgtaattcaaat |
16172080 |
T |
 |
| Q |
320 |
ttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaattcttcaaactctcttgaac |
419 |
Q |
| |
|
||||||| |||| |||| | ||||||||||||||| | ||||||||| |||| || | ||| ||| ||| ||||||||||||||||||| |||| |
|
|
| T |
16172079 |
ttggataaacactaaaatcttgtgttatatttccagtaagttggttttggtcaagtctaagtcttataatgctagagcaattcttcaaactcttaggaac |
16171980 |
T |
 |
| Q |
420 |
taggcctgtgaactggtta |
438 |
Q |
| |
|
| |||| ||||| |||||| |
|
|
| T |
16171979 |
tcggccggtgaagtggtta |
16171961 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 280 - 411
Target Start/End: Complemental strand, 17848090 - 17847959
Alignment:
| Q |
280 |
ccataaaaattattatcacttaagtccatgtagtccaagtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctca |
379 |
Q |
| |
|
|||||||||||||| | ||| || | |||||| ||||| || |||||||||||||| ||||||||||||||||| | |||||||||||||| ||| | |
|
|
| T |
17848090 |
ccataaaaattattttgactcaaatgcatgtaatccaaattcggatacacaccaaagaaatctgttatatttccagaaagttggttttgttcaagcctaa |
17847991 |
T |
 |
| Q |
380 |
ctctcttaaggctggagcaattcttcaaactc |
411 |
Q |
| |
|
||| || ||| |||||||||||||||||| |
|
|
| T |
17847990 |
ttcttacaatgcttgagcaattcttcaaactc |
17847959 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 410
Target Start/End: Original strand, 15665775 - 15665931
Alignment:
| Q |
254 |
actttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtccaagtttggatacacaccaaaactatctgttatatttcc |
353 |
Q |
| |
|
||||||||||||| | ||||| ||||||||||||||||| ||| || ||||| | ||||| ||||| || ||||| ||| ||||||||| ||||| |
|
|
| T |
15665775 |
actttccccaattggatgaaaggtgaccataaaaattattgtcatccaatcccatgaactccaaatttgggtatacacccaaatcatctgttatgtttcc |
15665874 |
T |
 |
| Q |
354 |
agtcaattggttttgttcaatcctcactctcttaaggctggagcaattcttcaaact |
410 |
Q |
| |
|
| || ||||| ||||||| ||| | ||| ||||||| ||||||||||||||||| |
|
|
| T |
15665875 |
atccatatggttatgttcaagcctaagtctaataaggctagagcaattcttcaaact |
15665931 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 101 - 438
Target Start/End: Complemental strand, 16024819 - 16024482
Alignment:
| Q |
101 |
acaaagataagttttctagctcctttggaattttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtgg |
200 |
Q |
| |
|
||||||||||||| || |||||||||||||| ||| || |||||||||||||| |||| |||| | ||||| | ||| | |||| ||||||||| |
|
|
| T |
16024819 |
acaaagataagttgcttaactcctttggaatttcccctgtgagatggtttgaagataagtcaagtgaacccaaattgggtgcccctcctatttctggtgg |
16024720 |
T |
 |
| Q |
201 |
tatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcactt |
300 |
Q |
| |
|
||| |||| | |||||| ||||| || || | | |||| || || | | ||||| ||||||| | ||||| || ||||||||||| || | |||| |
|
|
| T |
16024719 |
tatatggcctgatatattattattggaaatattgaaggttgtcaggttatggaacttttcccaattggatgaaaggtgtccataaaaattgttttgactt |
16024620 |
T |
 |
| Q |
301 |
aagtccatgtagtccaagtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaat |
400 |
Q |
| |
|
|| | |||||| |||| | |||||| |||||||| || |||||||||||||| | |||||||||||||| | | ||| ||| ||| ||||||| |
|
|
| T |
16024619 |
aattgcatgtaaaccaaatctggatatacaccaaagtcttcggttatatttccagtaagttggttttgttcaagtcgaagtcttataatgctagagcaat |
16024520 |
T |
 |
| Q |
401 |
tcttcaaactctcttgaactaggcctgtgaactggtta |
438 |
Q |
| |
|
|||||||||||| | |||| |||| ||||| |||||| |
|
|
| T |
16024519 |
tcttcaaactctttggaacgcggccagtgaagtggtta |
16024482 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 410
Target Start/End: Original strand, 18643 - 18799
Alignment:
| Q |
254 |
actttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtccaagtttggatacacaccaaaactatctgttatatttcc |
353 |
Q |
| |
|
||||||||||||| | ||||| ||||||||||||||||| ||| || ||||| | ||||| ||||| || ||||| ||| ||||||||| ||||| |
|
|
| T |
18643 |
actttccccaattagatgaaaggtgaccataaaaattattgtcatccaatcccatgaactccaaatttgggtatacacccaaatcatctgttatgtttcc |
18742 |
T |
 |
| Q |
354 |
agtcaattggttttgttcaatcctcactctcttaaggctggagcaattcttcaaact |
410 |
Q |
| |
|
| || ||||| ||||||| ||| | ||| ||||||| ||||||||||||||||| |
|
|
| T |
18743 |
atccatatggttatgttcaagcctaagtctaataaggctagagcaattcttcaaact |
18799 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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