View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17351_low_8 (Length: 495)
Name: NF17351_low_8
Description: NF17351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17351_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 32385082 - 32385572
Alignment:
| Q |
1 |
agacattggaggtaagccatctttcgatccttattctcaaattttcttctttacttcatagttcgtacgcactcctttatcatgttttcagtaacattat |
100 |
Q |
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| T |
32385082 |
agacattggaggtaagccatctttttatcctt---ctcaaattttcttctttacttcatagttcgtacgcactcctttatcgtgttttcagtaacattat |
32385178 |
T |
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| Q |
101 |
tttactcnnnnnnnncattataggacatcttgaatgtgtagaagacgaagattgtatggaagaat---gtccggttttttcttttcacaagtgcgaaaat |
197 |
Q |
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| T |
32385179 |
tttactctcttttttcattataggacatcttgaatgtgtagaagacgaagattgtatggaagaatcttgtccgattttttctgttcacaagtgcaaaaat |
32385278 |
T |
|
| Q |
198 |
accggatgtgaatgtgatgaaatgtttcgttgattctatgtgtacgactcgagagagtacaaaatgatcagtagagaagaacgagttattgtgctagcaa |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32385279 |
tccggatgtgaatgtgatgaaatgtttcgttgattctatgtgtacgactcgagagagtacaaaatgatcagtagagaagaacgagttattgtgctagcaa |
32385378 |
T |
|
| Q |
298 |
aagtactgatcaatataccttaagttgaaatattccaagagatgtcatttagttattgtgctagcatccaaaaattgta-nnnnnnncttcctaatatca |
396 |
Q |
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| T |
32385379 |
aagtactgatcaatataccttaagttgaaatattccaagagatgtcatttagttattgtgctagcatccaaaaattgtattttttttcttcctaatatca |
32385478 |
T |
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| Q |
397 |
tattccttgcaattatagtttcttactccaagatgatggtgatgaaatgaaatagttcaacaaagagtgttgtttatattatcttcttctctct |
490 |
Q |
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| T |
32385479 |
tattccttgcaattatagtttcttactcgaaaacgatgatgatgaaatgaaatagttcaacaaagagtatcgtttatattatcttcttctctct |
32385572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 297 - 450
Target Start/End: Original strand, 32392916 - 32393069
Alignment:
| Q |
297 |
aaagtactgatcaatataccttaagttgaaatattccaagagatgtcatttagttattgtgctagcatccaaaaattgtannnnnnncttcctaatatca |
396 |
Q |
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||||||| | ||||||| ||||| |||||||||| |||||||||| |||||||||||| |||| ||||||| ||||| ||||||||||| |
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| T |
32392916 |
aaagtaccgttcaatatgtcttaaattgaaatatttcaagagatgttgcttagttattgtgttagcgtccaaaagttgtattttttttgtcctaatatca |
32393015 |
T |
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| Q |
397 |
tattccttgcaattatagtttcttactccaagatgatggtgatgaaatgaaata |
450 |
Q |
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| T |
32393016 |
tattccttgcaattatagtttcttactctaagatgatggtgaagaaatgaaata |
32393069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 32392637 - 32392736
Alignment:
| Q |
1 |
agacattggaggtaagccatctttcgatccttattctcaaattttcttctttacttcatagttcgtacgcactcctttatcatgttttcagtaacattat |
100 |
Q |
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|||||| |||||||||| |||||| |||||| |||||||| |||||||||||||||||||||||| ||||| |||||||| |||| ||||||||||| |
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| T |
32392637 |
agacatcggaggtaagcaatctttttatcctt---ctcaaattatcttctttacttcatagttcgtacacactcttttatcatatttttagtaacattat |
32392733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 1681533 - 1681470
Alignment:
| Q |
41 |
attttcttctttacttcata-gttcgtacgcactcctttatcatgttttcagtaacattatttta |
104 |
Q |
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| T |
1681533 |
attttcttctttgcttcataagttcgtacacaatcttttatcatgttttga-taacattatttta |
1681470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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