View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17351_low_9 (Length: 492)
Name: NF17351_low_9
Description: NF17351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17351_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 119 - 477
Target Start/End: Original strand, 731702 - 732058
Alignment:
| Q |
119 |
cctacttcgtttccatgtaaatggaaataataagtagtttctaacgttttgtcacactggtcctgttagtccttggttgtatatttatttgactaatgag |
218 |
Q |
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| T |
731702 |
cctacttcgtttccatgtaaatggaaata-taagtagtttctaacgttttgtcacaccggtcctgttagtccttggttgtatatttatttgactaatgag |
731800 |
T |
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| Q |
219 |
acggacggaaacattggagagaaagtaggagagattgtaagatcatgaacgaaattagtggtttactaatttctctgatttttgaagtttttgcaagaag |
318 |
Q |
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| T |
731801 |
acggacggaaacgttggagagaaagtaggagagattgtaagatcat-aacgaaattagcggtttactaatttctctgatttttgaaatttttgcaagaag |
731899 |
T |
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| Q |
319 |
attaatatatccaatgttggatcgctgcttactctaagtagttaaatcttgcgttgtggtttttgtttgatggttaaatttttgttgcctcattcggcat |
418 |
Q |
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| T |
731900 |
attaatatatccaatgttggatcgctgcttactctaagtagttaaatcttgcgttgtggtttttgtttgatggttaaatttttgttgcctcattcggcat |
731999 |
T |
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| Q |
419 |
ttgattggttatgcccgagtagggtttcttgcttctttttgagcaagtgttgtggagac |
477 |
Q |
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| T |
732000 |
ttgattggttatgcccgcgtagggtttcttgcttctttttgagcgagtgttgtggagac |
732058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 731596 - 731676
Alignment:
| Q |
10 |
gcaaaggcaaaacgtaatgaaatgaatcagaannnnnnnncttccaccccttttagtaaaatcaaaattctgtccagtttc |
90 |
Q |
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| T |
731596 |
gcaaaggcaaaacgtaatgaaatgaatcagaatttttttacttccaccccttttagtaaaatcaagattctgtccagtttc |
731676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 728263 - 728330
Alignment:
| Q |
134 |
tgtaaatggaaataataagtagtttctaacgttttgtcacactggtcctgttagtccttggttgtatat |
202 |
Q |
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| T |
728263 |
tgtaaacgaaaataataagtagtttctaacgctttgtcacactagttc-ggtagtccttggttatatat |
728330 |
T |
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