View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17352_low_1 (Length: 453)

Name: NF17352_low_1
Description: NF17352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17352_low_1
NF17352_low_1
[»] chr5 (5 HSPs)
chr5 (84-351)||(24653388-24653663)
chr5 (109-351)||(24651388-24651626)
chr5 (215-315)||(29418556-29418655)
chr5 (18-85)||(24654166-24654233)
chr5 (378-438)||(20201226-20201286)
[»] chr8 (1 HSPs)
chr8 (373-441)||(29722482-29722550)
[»] chr2 (5 HSPs)
chr2 (373-441)||(856351-856419)
chr2 (373-441)||(3704213-3704281)
chr2 (373-438)||(20931017-20931082)
chr2 (373-441)||(34833151-34833219)
chr2 (373-441)||(39072621-39072688)
[»] chr4 (3 HSPs)
chr4 (373-440)||(28732458-28732525)
chr4 (373-438)||(8081569-8081634)
chr4 (373-421)||(56338111-56338159)
[»] chr3 (6 HSPs)
chr3 (373-440)||(38356279-38356346)
chr3 (373-441)||(52195196-52195264)
chr3 (376-435)||(53272813-53272872)
chr3 (373-422)||(21398428-21398477)
chr3 (374-441)||(55366097-55366164)
chr3 (376-436)||(36624409-36624469)
[»] chr7 (3 HSPs)
chr7 (373-441)||(38076971-38077039)
chr7 (376-441)||(14746640-14746705)
chr7 (376-414)||(4939025-4939063)
[»] chr6 (7 HSPs)
chr6 (373-441)||(32362551-32362619)
chr6 (373-441)||(15102326-15102394)
chr6 (376-441)||(17720314-17720379)
chr6 (373-438)||(29520423-29520488)
chr6 (377-438)||(8385240-8385301)
chr6 (373-422)||(34144709-34144758)
chr6 (373-422)||(34157325-34157374)
[»] chr1 (3 HSPs)
chr1 (384-430)||(17823621-17823667)
chr1 (373-439)||(26701298-26701364)
chr1 (377-438)||(10122377-10122438)


Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 84 - 351
Target Start/End: Complemental strand, 24653663 - 24653388
Alignment:
Q  84 atcttctcgtggacatcatacattgtgaccaataacattaaattgtttaaatatacaaacaaatatgatatgatgcaatttattctaaaaga----gttt 179  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |    | ||    
T  24653663 atcttctcgtggacatcatacattgtgaccattaacattaaattgtttaaatatacaaacaaatatgatatgatgcaatttattacaaaaaaaaaaggtt 24653564  T
Q  180 attcctatgagtttcctagacacaaattcattttaattttttat---aagttt-catttagtgatagctaattatttcaaaaataaataaatattagtga 275  Q
    |||||||| |||| |||||||||||||||||||||||||||| |   |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24653563 attcctataagttacctagacacaaattcattttaatttttttttttaagttttcatttagtgatagctaattatttcaaaaataaataaatattagtga 24653464  T
Q  276 gagctaatcttattagggacaatatctgccgagagtttaatttcttcggctaaatctaattccagttgacacataa 351  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24653463 gagctaatcttattagagacaatatctcccgagagtttaatttcttcggctaaatctaattccagttgacacataa 24653388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 109 - 351
Target Start/End: Complemental strand, 24651626 - 24651388
Alignment:
Q  109 tgaccaataacattaaattgtttaaatatacaaacaaatatgatatgatgcaatttattctaaaagagtttattcctatgagtttcctagacacaaattc 208  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| |||| |||| |||||||||     
T  24651626 tgaccattaacattaaattgtttaaatatacaaacaaatatgatatgttgtaatttattctaaaa-agtttattcctataagttacctacacacaaatta 24651528  T
Q  209 attttaatttttt-ataagtttcatttagtgatagctaattatttcaaaaataaataaatattagtgagagctaatcttattagggacaatatctgccga 307  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||| |||||||||||||||    
T  24651527 attttaatttttttataagttgcatttagtgatagctaattatttcaaaaataaata----ttagtgagagctaatcttattagagacaatatctgccga 24651432  T
Q  308 gagtttaatttcttcggctaaatctaattccagttgacacataa 351  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  24651431 gagtttaatttcttcggctaaatctaattccagttgatacataa 24651388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 215 - 315
Target Start/End: Original strand, 29418556 - 29418655
Alignment:
Q  215 attttttataagtttcatttagtgatagctaattatttcaaaaataaataaatattagtgagagctaatcttattagggacaatatctgccgagagttta 314  Q
    |||||||||||||||||||||||||||| | ||| ||| ||||||||||||||||||||||||||||||||||||   |||| |||||||||||||||||    
T  29418556 attttttataagtttcatttagtgatagatgatttttt-aaaaataaataaatattagtgagagctaatcttattgaagacactatctgccgagagttta 29418654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 24654233 - 24654166
Alignment:
Q  18 taaatttcttagtggttggattcgatagcataatatttcttttgaatgtacaaacaaaaatgatatat 85  Q
    ||||||||||||||||| ||||||||| |||||| ||  |||| ||||||||||||||||||||||||    
T  24654233 taaatttcttagtggtttgattcgataacataattttcttttttaatgtacaaacaaaaatgatatat 24654166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 438
Target Start/End: Complemental strand, 20201286 - 20201226
Alignment:
Q  378 tatattaacaacggcgatgaattctctatagcacaaggtgtactagagaggtcaccccaaa 438  Q
    |||||||||||||||| ||||| | | | |||||||||||||||  |||||||| ||||||    
T  20201286 tatattaacaacggcggtgaatccccaaaagcacaaggtgtactcaagaggtcatcccaaa 20201226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 373 - 441
Target Start/End: Complemental strand, 29722550 - 29722482
Alignment:
Q  373 tggaatatattaacaacggcgatgaattctctatagcacaaggtgtactagagaggtcaccccaaagaa 441  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29722550 tggaatatattaacaacggcgatgaattctctatagcacaaggtgtactaaagaggtcaccccaaagaa 29722482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 373 - 441
Target Start/End: Complemental strand, 856419 - 856351
Alignment:
Q  373 tggaatatattaacaacggcgatgaattctctatagcacaaggtgtactagagaggtcaccccaaagaa 441  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  856419 tggaatatattaacaacggcgatgaattctctatagcacaaggtgtactaaagaggtcaccccaaagaa 856351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 373 - 441
Target Start/End: Original strand, 3704213 - 3704281
Alignment:
Q  373 tggaatatattaacaacggcgatgaattctctatagcacaaggtgtactagagaggtcaccccaaagaa 441  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  3704213 tggattatattaacaacggcgatgaattctctatagcacaaggtgtattaaagaggtcaccccaaagaa 3704281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 373 - 438
Target Start/End: Complemental strand, 20931082 - 20931017
Alignment:
Q  373 tggaatatattaacaacggcgatgaattctctatagcacaaggtgtactagagaggtcaccccaaa 438  Q
    ||||||||||||||| || ||||   ||||||| |||||||||||||||| |||||||||||||||    
T  20931082 tggaatatattaacaccgacgatagtttctctagagcacaaggtgtactaaagaggtcaccccaaa 20931017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 441
Target Start/End: Complemental strand, 34833219 - 34833151
Alignment:
Q  373 tggaatatattaacaacggcgatgaattctctatagcacaaggtgtactagagaggtcaccccaaagaa 441  Q
    ||||||||||||||||||||| || | |||||  |||||||||||||||| ||| | ||||||||||||    
T  34833219 tggaatatattaacaacggcggtgtactctctgaagcacaaggtgtactacagaagccaccccaaagaa 34833151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 441
Target Start/End: Original strand, 39072621 - 39072688
Alignment:
Q  373 tggaatatattaacaacggcgatgaattctctatagcacaaggtgtactagagaggtcaccccaaagaa 441  Q
    ||||||||||||||||||||||||  | |||| ||||||||||||||||| ||| | ||||||||||||    
T  39072621 tggaatatattaacaacggcgatgt-tcctctttagcacaaggtgtactaaagaagccaccccaaagaa 39072688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 28732525 - 28732458
Alignment:
Q  373 tggaatatattaacaacggcgatgaattctctatagcacaaggtgtactagagaggtcaccccaaaga 440  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28732525 tggaatatattaacaacggcgatgaattctctatagcacaaggtgtactaaagaggtcaccccaaaga 28732458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 373 - 438
Target Start/End: Original strand, 8081569 - 8081634
Alignment:
Q  373 tggaatatattaacaacggcgatgaattctctatagcacaaggtgtactagagaggtcaccccaaa 438  Q
    ||||||||| ||||| ||||||||  | ||||| |||||||||||||||| ||| |||||||||||    
T  8081569 tggaatatactaacaccggcgatggttcctctaaagcacaaggtgtactaaagaagtcaccccaaa 8081634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 56338159 - 56338111
Alignment:
Q  373 tggaatatattaacaacggcgatgaattctctatagcacaaggtgtact 421  Q
    ||||||||||||||||||||  ||||| |||| ||||||||||||||||    
T  56338159 tggaatatattaacaacggcagtgaatcctctttagcacaaggtgtact 56338111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 38356346 - 38356279
Alignment:
Q  373 tggaatatattaacaacggcgatgaattctctatagcacaaggtgtactagagaggtcaccccaaaga 440  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  38356346 tggaatatattaacaacggcgatgaaatctctatagcacaaggtgtactaaagaggtcaccccaaaga 38356279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 373 - 441
Target Start/End: Complemental strand, 52195264 - 52195196
Alignment:
Q  373 tggaatatattaacaacggcgatgaattctctatagcacaaggtgtactagagaggtcaccccaaagaa 441  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||| || | |||||||||||||    
T  52195264 tggaatatattaacaactgcggtgaattctctatagcacaaggtgtactaaagcgatcaccccaaagaa 52195196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 435
Target Start/End: Complemental strand, 53272872 - 53272813
Alignment:
Q  376 aatatattaacaacggcgatgaattctctatagcacaaggtgtactagagaggtcacccc 435  Q
    |||||||||||||||||| ||| ||||||||| |||||||||||||| ||||| ||||||    
T  53272872 aatatattaacaacggcggtgacttctctataacacaaggtgtactaaagaggccacccc 53272813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 373 - 422
Target Start/End: Original strand, 21398428 - 21398477
Alignment:
Q  373 tggaatatattaacaacggcgatgaattctctatagcacaaggtgtacta 422  Q
    |||||||||||||||||||||||||| ||||  ||| |||||||||||||    
T  21398428 tggaatatattaacaacggcgatgaaatctcattagtacaaggtgtacta 21398477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 441
Target Start/End: Original strand, 55366097 - 55366164
Alignment:
Q  374 ggaatatattaacaacggcgatgaattctctatagcacaaggtgtactagagaggtcaccccaaagaa 441  Q
    |||||||||||||||||||| || | ||| |  |||||||||||||||| ||| | ||||||||||||    
T  55366097 ggaatatattaacaacggcggtgtactctttgaagcacaaggtgtactacagaagccaccccaaagaa 55366164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 436
Target Start/End: Complemental strand, 36624469 - 36624409
Alignment:
Q  376 aatatattaacaacggcgatgaattctctatagcacaaggtgtactagagaggtcacccca 436  Q
    |||||||||| |  |||||||||||||||  |||||||||||||||  ||||| |||||||    
T  36624469 aatatattaatactggcgatgaattctcttcagcacaaggtgtactcaagaggccacccca 36624409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 373 - 441
Target Start/End: Complemental strand, 38077039 - 38076971
Alignment:
Q  373 tggaatatattaacaacggcgatgaattctctatagcacaaggtgtactagagaggtcaccccaaagaa 441  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||    
T  38077039 tggaatatattaacaacggcgatgaattctctatagcacaagatgtactaaagaggtcatcccaaagaa 38076971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 376 - 441
Target Start/End: Original strand, 14746640 - 14746705
Alignment:
Q  376 aatatattaacaacggcgatgaattctctatagcacaaggtgtactagagaggtcaccccaaagaa 441  Q
    ||||||||||||||| ||||||| |||| |||||||||||||||||| ||||||||||||||||||    
T  14746640 aatatattaacaacgacgatgaactctcaatagcacaaggtgtactaaagaggtcaccccaaagaa 14746705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 414
Target Start/End: Complemental strand, 4939063 - 4939025
Alignment:
Q  376 aatatattaacaacggcgatgaattctctatagcacaag 414  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  4939063 aatatattaacaacggcgatgaactctcgatagcacaag 4939025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 373 - 441
Target Start/End: Original strand, 32362551 - 32362619
Alignment:
Q  373 tggaatatattaacaacggcgatgaattctctatagcacaaggtgtactagagaggtcaccccaaagaa 441  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||    
T  32362551 tggaatatattaacaacggcgatgaattctctatagcacaagatgtactaaagaggtcatcccaaagaa 32362619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 373 - 441
Target Start/End: Complemental strand, 15102394 - 15102326
Alignment:
Q  373 tggaatatattaacaacggcgatgaattctctatagcacaaggtgtactagagaggtcaccccaaagaa 441  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| ||||| ||||||||    
T  15102394 tggaatatattaacaacggcggtgaattctctgtagcacaaggtgtactaaagaagtcactccaaagaa 15102326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 376 - 441
Target Start/End: Original strand, 17720314 - 17720379
Alignment:
Q  376 aatatattaacaacggcgatgaattctctatagcacaaggtgtactagagaggtcaccccaaagaa 441  Q
    |||||||||||||||||| |||| |||| ||||||||||||||||||  |||||||||||||||||    
T  17720314 aatatattaacaacggcggtgaactctcgatagcacaaggtgtactaatgaggtcaccccaaagaa 17720379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 373 - 438
Target Start/End: Original strand, 29520423 - 29520488
Alignment:
Q  373 tggaatatattaacaacggcgatgaattctctatagcacaaggtgtactagagaggtcaccccaaa 438  Q
    ||||||||||||||| || |||||  | ||||| |||||||||||||||| ||||| |||||||||    
T  29520423 tggaatatattaacaccgacgatggttcctctaaagcacaaggtgtactaaagaggccaccccaaa 29520488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 438
Target Start/End: Complemental strand, 8385301 - 8385240
Alignment:
Q  377 atatattaacaacggcgatgaattctctatagcacaaggtgtactagagaggtcaccccaaa 438  Q
    ||||||||||||||||| ||||| | |   |||||||||||||||  |||||||||||||||    
T  8385301 atatattaacaacggcggtgaatccccataagcacaaggtgtactcaagaggtcaccccaaa 8385240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 422
Target Start/End: Complemental strand, 34144758 - 34144709
Alignment:
Q  373 tggaatatattaacaacggcgatgaattctctatagcacaaggtgtacta 422  Q
    ||||||||||||||||||| | | ||||||||  ||||||||||||||||    
T  34144758 tggaatatattaacaacggtggtaaattctcttcagcacaaggtgtacta 34144709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 422
Target Start/End: Complemental strand, 34157374 - 34157325
Alignment:
Q  373 tggaatatattaacaacggcgatgaattctctatagcacaaggtgtacta 422  Q
    ||||||||||||||||||| | | ||||||||  ||||||||||||||||    
T  34157374 tggaatatattaacaacggtggtaaattctcttcagcacaaggtgtacta 34157325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 17823621 - 17823667
Alignment:
Q  384 aacaacggcgatgaattctctatagcacaaggtgtactagagaggtc 430  Q
    |||||||||||||||| |||| ||||||||||||||||  |||||||    
T  17823621 aacaacggcgatgaatcctctttagcacaaggtgtactcaagaggtc 17823667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 439
Target Start/End: Complemental strand, 26701364 - 26701298
Alignment:
Q  373 tggaatatattaacaacggcgatgaattctctatagcacaaggtgtactagagaggtcaccccaaag 439  Q
    ||||||||||||||||||||||||| |  | | ||||||||||||||||| ||| |  |||||||||    
T  26701364 tggaatatattaacaacggcgatgattcttatttagcacaaggtgtactaaagaagcaaccccaaag 26701298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 438
Target Start/End: Original strand, 10122377 - 10122438
Alignment:
Q  377 atatattaacaacggcgatgaattctctatagcacaaggtgtactagagaggtcaccccaaa 438  Q
    ||||||||||||||||| ||||| | || ||| ||||| ||||||  |||||||||||||||    
T  10122377 atatattaacaacggcggtgaatcccctttagtacaagatgtactcaagaggtcaccccaaa 10122438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University