View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17352_low_4 (Length: 253)
Name: NF17352_low_4
Description: NF17352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17352_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 4586741 - 4586512
Alignment:
| Q |
1 |
taattgatctcacagttaacattaacactacttaacgaaaacactaaatatagtttgaggtagttggcagaagaaagtataaatggttcactgcagatcc |
100 |
Q |
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| T |
4586741 |
taattgatctcgcagttaacattaacactacttaacgaaaacactaaatatagtttgaggtagttagcagaagaaagtataaatagttcactgcagatcc |
4586642 |
T |
|
| Q |
101 |
ctaaattctatgcatcttcaattttgatctttaaaaataataacagtgcgaggaatctagcatgaaataatcttattatcatgaaaaataggaataataa |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4586641 |
ctaaattctatgcatcttcaattatgatctttaaaaataataacagtgcgaggaatctagcatgaaataatcttattatcatgaaaaataggaataataa |
4586542 |
T |
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| Q |
201 |
cgatagaatgattagtaaatcaatgaaaga |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
4586541 |
cgatagaatgattagtaaatcaatgaaaga |
4586512 |
T |
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