View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17352_low_5 (Length: 251)
Name: NF17352_low_5
Description: NF17352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17352_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 35022660 - 35022423
Alignment:
| Q |
14 |
atcaacaacaaacctgaagaacaatcagcaacaaaatgaaacccacattcaccaatcttttccatccagaagagaaatcaatcttatcatactttgtcga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35022660 |
atcaacaacaaacctgaagaacaatcagcaacaaaatgaaacccacattcaccaatcttttccatccagaagagaaatcaatcttatcatactttgtcga |
35022561 |
T |
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| Q |
114 |
accattcggatacaaaatcccccaattccttccatttccagcaccttccttatcaaacaattcatacagataaacccctttcactccatctttcaacaat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35022560 |
accattcggatacaaaatcccccaattccttccatttccagcaccttccttatcaaacaattcatacagataaacccctttcactccatctttcaacaat |
35022461 |
T |
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| Q |
214 |
ggcgttccggcaccggacttcaaatgcttcaccaatcc |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
35022460 |
ggcgttccggcaccggacttcaaatgcttcaccaatcc |
35022423 |
T |
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