View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17352_low_8 (Length: 222)
Name: NF17352_low_8
Description: NF17352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17352_low_8 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 19135817 - 19135627
Alignment:
| Q |
16 |
caatggatatctgatattcctgccaagaaaatcttcttgggattgccagcttcccctcaggctgcaggtagtggctttatatctgccactgatcttactt |
115 |
Q |
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| T |
19135817 |
caatggatatctgatattccagccaagaaaatcttcttgggattgccagcttcccctcaggctgcaggaagtggctttatatctgccactgatcttactt |
19135718 |
T |
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| Q |
116 |
caaaagtgcttccagcaattaaagattcttccaaatatggtggtgttatgctttggtctaggtactatgatgatcagagtggttatagttc |
206 |
Q |
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| T |
19135717 |
caaaagtgcttccagcaattaaagattcttccaaatatggtggtgttatgctttggtctaggtactatgatgatcagagtggttatagttc |
19135627 |
T |
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Target: scaffold0027 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 203
Target Start/End: Original strand, 148987 - 149141
Alignment:
| Q |
49 |
ttcttgggattgccagcttcccctcaggctgcaggtagtggctttatatctgccactgatcttacttcaaaagtgcttccagcaattaaagattcttcca |
148 |
Q |
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| T |
148987 |
ttcttggggttacctgcttctccagaggctgcaggcagtggcttcattcctgctactgatcttacttccactgtgcttccagctattaaaggttctgcta |
149086 |
T |
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| Q |
149 |
aatatggtggtgttatgctttggtctaggtactatgatgatcagagtggttatag |
203 |
Q |
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| T |
149087 |
aatatggcggtgttatgctgtggtctaggtatgatgatgttcagagtggttatag |
149141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 24367337 - 24367258
Alignment:
| Q |
124 |
cttccagcaattaaagattcttccaaatatggtggtgttatgctttggtctaggtactatgatgatcagagtggttatag |
203 |
Q |
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| T |
24367337 |
cttccagttattaaaggttcttccaaatatggtggtgttatgctgtggtctaggtatgatgatgttcagagtggttatag |
24367258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 207
Target Start/End: Complemental strand, 24454971 - 24454871
Alignment:
| Q |
107 |
atcttacttcaaaagtgcttccagcaattaaagattcttccaaatatggtggtgttatgctttggtctaggtactatgatgatcagagtggttatagttc |
206 |
Q |
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| T |
24454971 |
atcttacttccattgtgcttcccgctataaagggttcttctaaatatggtggtgttatgttgtggtctagatactatgatgttttgagtggttatagttc |
24454872 |
T |
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| Q |
207 |
t |
207 |
Q |
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| T |
24454871 |
t |
24454871 |
T |
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