View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17353_high_1 (Length: 497)
Name: NF17353_high_1
Description: NF17353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17353_high_1 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 23 - 497
Target Start/End: Original strand, 13774273 - 13774746
Alignment:
| Q |
23 |
aattaaacatcgaacatatgaaatgttcgtcacaaagtgttaatagatgacgatggattgaattacctgagcttgaacaagagaagtgagatcagaagga |
122 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13774273 |
aattaaacatcgaacatatgaa-tgttcgtcacaaagtattaatagatgatgatggattgaattacctgagcttgaacaagagaagtgagatcagaagga |
13774371 |
T |
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| Q |
123 |
ttgacaacaccactactacattgaagggaagcttgttttgtagacaaatattgagaataagtggacattgcaaatgtagcagttgaaacatattgattat |
222 |
Q |
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| T |
13774372 |
ctgacaacaccactattacattgaagggaagcttgttttgtagataaatattgagaataagtggacattgcaaatgtagcagttgaaacatattgattat |
13774471 |
T |
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| Q |
223 |
taccccatggctgaaaccataacaaacctcctggtgttttgtgaaaattttgagttgatttttgtgcacatgaacatatgaattgttctgcatttgcttt |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13774472 |
taccccatggctgaaaccataacaaacctcctggtgttttctgaaaattttgagttgatttttgtgcacatgaacatatgaattgttctgcatttgcttt |
13774571 |
T |
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| Q |
323 |
gtattgagtccaaatacctgaagactccactgtcccatctaaaacaagctacatgatcgacgcaatataacagaataattaagtagtaataaaaacatta |
422 |
Q |
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| T |
13774572 |
gtattgagtccaaatacctgaagactccactgtcccatctaaaacaagctacatgatcgacgcaatataacagaataattaagtagtaataaaaacatta |
13774671 |
T |
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| Q |
423 |
aaaatatcaaaattttctaattagctttaggaagatgaatgctattgagttatatatacctttgcagcaagaatc |
497 |
Q |
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| T |
13774672 |
aaaatatcaaaattttctaattagctttaggaagatgaatgctattgagttatatatacctttgcagcaagaatc |
13774746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 79 - 262
Target Start/End: Original strand, 13764497 - 13764680
Alignment:
| Q |
79 |
attgaattacctgagcttgaacaagagaagtgagatcagaaggattgacaacaccactactacattgaagggaagcttgttttgtagacaaatattgaga |
178 |
Q |
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|||| |||||||||| |||||||||||| ||||||||||||||| | ||| |||| |||||||| |||| ||||| ||| ||||||| |||| ||| |
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| T |
13764497 |
attggattacctgagattgaacaagagatgtgagatcagaaggactaacatcaccttcactacattttagggttgcttgctttttagacaagtatttaga |
13764596 |
T |
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| Q |
179 |
ataagtggacattgcaaatgtagcagttgaaacatattgattattaccccatggctgaaaccataacaaacctcctggtgtttt |
262 |
Q |
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| T |
13764597 |
ataagtggccattgcaaatgtagcagtagaaacatattgaatattagtccatggttgaaaccataacaaaccccctggtgtttt |
13764680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 81 - 378
Target Start/End: Complemental strand, 16854701 - 16854397
Alignment:
| Q |
81 |
tgaattacctgagcttgaacaagagaagtgagatcagaaggattgacaacaccactactacattgaagggaagcttgttttgtagacaaatattgagaat |
180 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
16854701 |
tgaattacctgagcttgaacaagagatgtgagatcagaaggactgagaacaccatcactacattgaagggaagcttgttttggagacaaatattgagagt |
16854602 |
T |
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| Q |
181 |
aagtggacattgcaaatgtagcagttgaaacat--attgat-tattaccccatggctgaaaccat----aacaaacctcctggtgttttgtgaaaatttt |
273 |
Q |
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|| || ||||||||||||| ||||||||||||| ||| | ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| |
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| T |
16854601 |
aaatgaacattgcaaatgtggcagttgaaacattgattattatattaccccatggctgaaaccataacaaacaaacctcctggtgttttctgaaagtttt |
16854502 |
T |
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| Q |
274 |
gagttgatttttgtgcacatgaacatatgaattgttctgcatttgctttgtattgagtccaaatacctgaagactccactgtcccatctaaaacaagcta |
373 |
Q |
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| T |
16854501 |
gggttcatttttgtgcacatgagcatatgaattgttctgcatttgctttgtattgagcccaaatacccgaagactccaccgtcgcatctaaaacaagcta |
16854402 |
T |
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| Q |
374 |
catga |
378 |
Q |
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| T |
16854401 |
catga |
16854397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 456 - 496
Target Start/End: Complemental strand, 16854270 - 16854230
Alignment:
| Q |
456 |
gatgaatgctattgagttatatatacctttgcagcaagaat |
496 |
Q |
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| T |
16854270 |
gatgaatgctattgaattatatatacctttgcagcaagaat |
16854230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 234 - 378
Target Start/End: Original strand, 17264702 - 17264846
Alignment:
| Q |
234 |
tgaaaccataacaaacctcctggtgttttgtgaaaattttgagttgatttttgtgcacatgaacatatgaattgttctgcatttgctttgtattgagtcc |
333 |
Q |
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|||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| || |
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| T |
17264702 |
tgaaaccataacaaacctcccagtgttttttgaaagttttgagttgatttttgtgcacatgagcatatgaattgttctgcattttctttgtattgatccc |
17264801 |
T |
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| Q |
334 |
aaatacctgaagactccactgtcccatctaaaacaagctacatga |
378 |
Q |
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| T |
17264802 |
aaatacctgaagactctactgtcccatctaaaacaagctacatga |
17264846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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