View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17353_high_4 (Length: 370)
Name: NF17353_high_4
Description: NF17353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17353_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 13 - 370
Target Start/End: Original strand, 3764365 - 3764721
Alignment:
| Q |
13 |
aaaatctccattttccatctcacatccaattccacacatttcttcaaccactaatatctaaccctcatatatccaacccttcatcacaaacacttctttc |
112 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
3764365 |
aaaatctccatttttcatctcacatccaattccacacatttcttcaaccactaatatctaaccctcatatatccaacccttcatcgcaaacacttatttc |
3764464 |
T |
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| Q |
113 |
aaacaaaaccaaaaccaataccaataatccaataatggcttcagcttctgtttcaatgtctttaccactgacccaagcaacccacaaaaaccttcacaat |
212 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
3764465 |
aaacaaaaccaaaaccaa-accaataatccaataatggcttcagcttctgtttcaatgtctttaccactaacccaagcaactcacaaaaaccttcacaat |
3764563 |
T |
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| Q |
213 |
tcttcctccacacccttcttgaaaccattgccctttccacaagcaaagaaggcactagtcaacaagtcaacttcaaaatccaatgttgttggaattcaag |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3764564 |
tcttcctccacacccttcttgaaaccattgccctttccacaagcaaagaagacactagtcaacaagtcaacttcaaaatccaatgttgttggaattcaag |
3764663 |
T |
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| Q |
313 |
catcattgaaagacaaaacagtgaagggtctaacagcttttgcattaacagcctctat |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3764664 |
catcattgaaagacaaaacagtgaagggtctaacagcttttgcattaacagcctctat |
3764721 |
T |
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