View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17354_low_1 (Length: 269)
Name: NF17354_low_1
Description: NF17354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17354_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 24414182 - 24414321
Alignment:
| Q |
3 |
atcaaataagcaaatgaagacatataggtctggaaatcagttcttgcctattcaccaataacttcaataggatttaagaaatacgctccttcacaatagg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
24414182 |
atcaaataagcaaatgaagacatataggtctggaaattggttcttgcctattcaccaataacttcaataggatttaagaaatatgttccttcacaatagg |
24414281 |
T |
|
| Q |
103 |
ataaaagacgggactgatttatctcaaatcaactaataat |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24414282 |
ataaaagacgggactgatttatctcaaatcaactaataat |
24414321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 19024385 - 19024446
Alignment:
| Q |
3 |
atcaaataagcaaatgaagacatataggtctggaaatcagttcttgcctattcaccaataac |
64 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
19024385 |
atcaaataagcaaatgaagacatataggtctggaaatttattctttcctattcaccaataac |
19024446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 30397397 - 30397438
Alignment:
| Q |
211 |
tgcaatataggttcgtctagaaaacattcctaagaaatacca |
252 |
Q |
| |
|
||||||||||||| |||||||||||| || |||||||||||| |
|
|
| T |
30397397 |
tgcaatataggttagtctagaaaacagtcttaagaaatacca |
30397438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 48011422 - 48011384
Alignment:
| Q |
139 |
taatgtactttgattcccatgtcatattctctgcctcat |
177 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
48011422 |
taatgtactttgattcccatgtcacatgctctgcctcat |
48011384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University