View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17354_low_2 (Length: 237)
Name: NF17354_low_2
Description: NF17354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17354_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 35550927 - 35551149
Alignment:
| Q |
1 |
ctgatatttccatcaatatattcaaatgtagtttggccccatttgtagttaagcactagttggttcgtccaaccaagtttgattcacattgactccaacc |
100 |
Q |
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| T |
35550927 |
ctgatatttccatcaatatattcaaatgtagtttggccccatctgtagttaagcactagttggttcgtccaactaagtttgattcacattgactccaacc |
35551026 |
T |
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| Q |
101 |
aaaaaagctttgtggaagaccacttttaaaccatgtcatctcaaaaagaagtacactcgctttgagagctctaatgttcgcccaagacttctcttcctcc |
200 |
Q |
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| T |
35551027 |
aaaaaagctttgtggaagatcacttttaaaccatgtcatctcaaaaagaagtacactcgctttgagagctctaatgttcgcccaagacttctcttcctcc |
35551126 |
T |
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| Q |
201 |
atactcatatcatcaacaaattg |
223 |
Q |
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| T |
35551127 |
aaactcatatcatcaacaaattg |
35551149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 35556133 - 35556280
Alignment:
| Q |
1 |
ctgatatttccatcaatatattcaaatgtagtttggccccatttgtagttaagcactagttggttcgtccaaccaagtttgattcacattgactccaacc |
100 |
Q |
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|||||||||||||| |||||||||||||||| |||||| |||||| ||||||||| |||| ||||||||||||||||| |||||||||||||||||| |
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| T |
35556133 |
ctgatatttccatccatatattcaaatgtagcttggccacatttgcccttaagcacttgttgcttcgtccaaccaagtttcattcacattgactccaact |
35556232 |
T |
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| Q |
101 |
aaaaaagc-tttgtggaagaccacttttaaaccatgtcatctcaaaaa |
147 |
Q |
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| T |
35556233 |
aaaaaaacatttatggaagatcacttttaaagcatgtcatctcaaaaa |
35556280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 35556282 - 35556338
Alignment:
| Q |
167 |
agctctaatgttcgcccaagacttctcttcctccatactcatatcatcaacaaattg |
223 |
Q |
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||||||||| || ||| | ||||||||||||| || |||||||||||||||| |||| |
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| T |
35556282 |
agctctaatatttgcctatgacttctcttccttcaaactcatatcatcaacatattg |
35556338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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