View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17355_high_11 (Length: 261)
Name: NF17355_high_11
Description: NF17355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17355_high_11 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 41794977 - 41794730
Alignment:
| Q |
11 |
cacagatagtgaaatgaatatttgtgtaaatttcattagatttgaatgagttttcatcccttgtgtcagtgttgatatattttggaattttaatcgacac |
110 |
Q |
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| T |
41794977 |
cacagatagtgaaatgaatatttgtgtaaatttcattagatttgaatgagttttcatcccttgagtcagtgttgatatattttggaattttaatcgacac |
41794878 |
T |
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| Q |
111 |
atattgtccattatagtgtttactctgatgaggaaaggaaaagaaacttgtagtgagataggatggtttggtgaattaagggcacgaatgactcattata |
210 |
Q |
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| T |
41794877 |
atattgtccat---agtgtttactctgatgaggaaaggaaaagaaacttgtagtgagataggatggtttggtgaattaagggcatgaatgactcattata |
41794781 |
T |
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| Q |
211 |
tatagtgctgattggtgtgtacttgagagggtgattcattctattgtcaat |
261 |
Q |
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| T |
41794780 |
tatagtgctgattggtgtgtacttgagagggtgattcattctattgtcaat |
41794730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 41760125 - 41760015
Alignment:
| Q |
11 |
cacagatagtgaaatgaatatttgtgtaaatttcattagatttgaatgagttttcatcccttgtgtcagtgttgatatattttggaattttaatcgacac |
110 |
Q |
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| T |
41760125 |
cacagatagtgaaatgaatatttgtgtaaatttcataagatgggaatgagttttcatcccttgagtcagtgttgatatattttggaaatttagttgacac |
41760026 |
T |
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| Q |
111 |
atattgtccat |
121 |
Q |
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| T |
41760025 |
atattgtccat |
41760015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 41759965 - 41759878
Alignment:
| Q |
160 |
gtagtgagataggatggtttggtgaattaagggcacgaatgactcattatatatagtgctgattggtgtgtacttgagagggtgattc |
247 |
Q |
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| T |
41759965 |
gtagtgagatatgatggtttggtgaattaaagccaggaaggcctcattatatatagtggtgactggtgtgtactggagagggtgattc |
41759878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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