View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17355_high_12 (Length: 254)
Name: NF17355_high_12
Description: NF17355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17355_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 45067648 - 45067421
Alignment:
| Q |
10 |
aagaatatgatggcaaattgatccatttggacattctgcagtgcaggcctacttgttgggagcagaggtaccattttgttaaattgtaagaaacatataa |
109 |
Q |
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| T |
45067648 |
aagaataggatggcaaattgatccatttggacattctgcagtgcaggcctacttgttgggagcagaggtaccattttgttaaattgtaagaaacatataa |
45067549 |
T |
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| Q |
110 |
atttgatgatgagaaaaagaatgattttgaagttgatttgcctataagtctattcattttttcacacannnnnnnacttgtttcttaagcactacccttg |
209 |
Q |
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| T |
45067548 |
atttgatgatgagaaaaagaatgattttgaagttgatttgcctataagtctattcattttttcacacatttttttacttgtttcttaagcactacccttg |
45067449 |
T |
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| Q |
210 |
ttggcataggttggatttgactcattat |
237 |
Q |
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| T |
45067448 |
ttggcataggttggatttgactcattat |
45067421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 32399896 - 32399827
Alignment:
| Q |
20 |
tggcaaattgatccatttggacattctgcagtgcaggcctacttgttgggagcagaggtaccattttgtt |
89 |
Q |
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| T |
32399896 |
tggcagattgatccgtttggccattctgcagttcaggcttacttgcttggagctgaggtacgatattgtt |
32399827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 32385536 - 32385484
Alignment:
| Q |
20 |
tggcaaattgatccatttggacattctgcagtgcaggcctacttgttgggagc |
72 |
Q |
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| T |
32385536 |
tggcaaattgacccgtttggacattctgctgtgcaggcttatttattgggagc |
32385484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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