View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17355_high_15 (Length: 239)
Name: NF17355_high_15
Description: NF17355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17355_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 41794661 - 41794440
Alignment:
| Q |
1 |
tttctttatctttaaaataaaataaggtgaaattgattgtgacacgctaaagtaagtagtccactttcttattcttgtaagcatcactgtatgaaaagaa |
100 |
Q |
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| T |
41794661 |
tttctttatctttaaaataaaataaggtgaaattgattgtgacacgctaaagaaagtagtccactttcttattcttgtaagcatcactatatgaaaagaa |
41794562 |
T |
|
| Q |
101 |
agaaaaaataacaatagttgtttctttgtttttagaaaaacactacacttttttaccacttatacatatgaggttagaaaaatgggaactgatcatataa |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41794561 |
agaaaaaataacaaaagttgtttctttgtttttagaaaaaccctacacttttttaccacttatacatatgaggttagaaaaatgggaactgatcatataa |
41794462 |
T |
|
| Q |
201 |
gtggtccatcgaagattacttt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
41794461 |
gtggtccatcgaagattacttt |
41794440 |
T |
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