View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17355_high_5 (Length: 425)
Name: NF17355_high_5
Description: NF17355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17355_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 2234050 - 2233642
Alignment:
| Q |
1 |
tcaatcatcatcatcctatttagttggggaaaggaatttcaaaatgttggtgccgatagaagagtgaaagcatggcacgtcgaaattgaaggataagaaa |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2234050 |
tcaatcatcatcgtcctatttagttggggaaaggaatttcaaaatgttggtgccgatagaagagtgaaagcatggcacgtcgaaattgaaggataagaaa |
2233951 |
T |
|
| Q |
101 |
aagaaatggcattgtaatgataagggaccttagaaaaagattnnnnnnnn-tataagagacgtgagtgagcccctcacatggacattaattggatagata |
199 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2233950 |
aagaaatggcgttgtaatgataagggaccttagaaaaagattaaaaaataatataagagacgtgagtgagcccctcacatggacattaattggatagata |
2233851 |
T |
|
| Q |
200 |
ggacccattttataagacatttggggacagagtaggtaacttggtcacaagctttcgaccacaaaaacttctgttgttgccactctgcttgatgggtatt |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2233850 |
ggacccattttataagacatttggggacagagtaggtgacttggtcacaagctttcgaccacaaaaacttctgttgttgccactctgcttgatgggtatt |
2233751 |
T |
|
| Q |
300 |
acgttagcaaatacatcactgtttcaattatacatgatacatacatgcatgcctttcaaaaatctgtataacattgatttcgtctctcaatattttgaaa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2233750 |
acgttagcaaatacatcactgtttcaattatacatgatacatacatgcatgcctttcaaaaatctgtataacattgatttcgtctctcaatattttgaaa |
2233651 |
T |
|
| Q |
400 |
tatttttct |
408 |
Q |
| |
|
||||||||| |
|
|
| T |
2233650 |
tatttttct |
2233642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University