View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17355_high_6 (Length: 345)
Name: NF17355_high_6
Description: NF17355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17355_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 35652598 - 35652905
Alignment:
| Q |
16 |
acaccctaaaaatcacgatgacattatttgggaaagcattatttgtttaattttacaaagggaagtgctataagtcgcgagaaaaatcttaggaatgtat |
115 |
Q |
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| T |
35652598 |
acaccctaaaaatcacgatgacattatttggaaaagcattatttgcttaattttacaagggaaagtgctatacgtcacgagaaaagtcttacgaatgtat |
35652697 |
T |
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| Q |
116 |
ctcgatagctaaactgctttgtt-aaataaataaataaaaccaggttccacttggcaatcacgcggtaacnnnnnnntaaaggatttttggtataacgtg |
214 |
Q |
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| T |
35652698 |
ctcgatagctaaactgctttgttaaaataaaataaaaaaaccaggttccacttggcaatcacgtggtaacaaaaaaataaaggatttttggtataacatg |
35652797 |
T |
|
| Q |
215 |
tcgtgatgttccgcgaaataatgaatcgctggaaaaagcatctctcttttacaaactaagagaaataatcatgcattcttaaaagnnnnnnngagaaagc |
314 |
Q |
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| T |
35652798 |
tcgtgatgttccgcgaaataatgaatcgctggaaaaagcatttctcttttacaaactaagaga---aatcatgcattcttaaaagaaaaaaagagaaagc |
35652894 |
T |
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| Q |
315 |
atgcatattat |
325 |
Q |
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| T |
35652895 |
atgcatattat |
35652905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 192 - 254
Target Start/End: Original strand, 15026782 - 15026844
Alignment:
| Q |
192 |
taaaggatttttggtataacgtgtcgtgatgttccgcgaaataatgaatcgctggaaaaagca |
254 |
Q |
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| T |
15026782 |
taaaggatttttggtataacgtgtcgtgaagttccgcaaaataatgattcgttggaaaaagca |
15026844 |
T |
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