View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17355_low_1 (Length: 665)
Name: NF17355_low_1
Description: NF17355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17355_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 90 - 649
Target Start/End: Complemental strand, 3308640 - 3308080
Alignment:
| Q |
90 |
gattgtttacacaatgcagcctgaaaatgatttgtttgcgggagagagcaaatatccaatttgaatcatgctacccctgattcgaatcaaccaagaaaaa |
189 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3308640 |
gattgtttacacaattcagcctgaaaatgatttatttgcgggagagagcaaatatcaaatttgaatcatgctacccctgattcgaatcaaccaagaaaaa |
3308541 |
T |
|
| Q |
190 |
ca-gtgacttgaacccattttcaccaccaaggttcgaatcaacctttcaccccaattaccatgatttaaatcgtcacctctagaagctaaaaacacatat |
288 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3308540 |
aaagtgacttgaacccattttcaccaccaaggctcgaatcaacctttcaccccaattaccttgatttaaatcatcacctctagaagctaaaaacacatat |
3308441 |
T |
|
| Q |
289 |
ttgaagacatactcgctataattctccactttgacttcaaataagtggtaatgctcaatatttacccatcaaccacttgttgctctcttgagtgctcgaa |
388 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3308440 |
ttgaagacatactcgccataattctccactttgacttcaaataagtggtaatgctcaatatttacccatcaaccacttgttgctctcttgagtgccgaaa |
3308341 |
T |
|
| Q |
389 |
ttactcttcagcaaaactgatcaagtccaagaaattcttgaaccctgttataggcatcgacctccacttccatccaactaccctttgatccttaggtagt |
488 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3308340 |
ttactcttcagcaaaactgatcaagtccgagaaattcttgaaccctgttataggcatcgacctccacttccatccaactaccctttgatccttaggtagt |
3308241 |
T |
|
| Q |
489 |
cctacaagttttcaagtttgattcttctccataaattcttttcctcattcactttcttcttccgtgaactcctttcctcattcatttcatattgccattt |
588 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3308240 |
cccacaagttttcaagtttgattcttctccatgaattcttttcctcattcactttcttcttccgtgaactcttttcctcattcatttcatattgccattt |
3308141 |
T |
|
| Q |
589 |
ctaattatccttgttctcgactgcttccttaaagatattcgattcctacttgcatattttc |
649 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3308140 |
ctaattatcattgttctcgactgcttccttaaagatattcgattcctacttgcatattttc |
3308080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 3308745 - 3308668
Alignment:
| Q |
10 |
aagaatatagcgatttaaactagaagaaacctagaagcaatgtgcagagaaatcaaacaatcaatcgaaagaacaaaa |
87 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||| |
|
|
| T |
3308745 |
aagaaaatagcgatttaaactagaagaaacctagaagcaatgtgtagagaaatcacaaaatcaatcgaaagaacaaaa |
3308668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 4386426 - 4386380
Alignment:
| Q |
386 |
gaattactcttcagcaaaactgatcaagtccaagaaattcttgaacc |
432 |
Q |
| |
|
||||||||||||| ||||| ||| |||||||||| |||||||||||| |
|
|
| T |
4386426 |
gaattactcttcaacaaaattgaccaagtccaagcaattcttgaacc |
4386380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 451 - 519
Target Start/End: Original strand, 16257296 - 16257364
Alignment:
| Q |
451 |
tccacttccatccaactaccctttgatccttaggtagtcctacaagttttcaagtttgattcttctcca |
519 |
Q |
| |
|
||||||| ||||||||||||||||| | |||||||| ||||||||| |||||||| ||||| |||| |
|
|
| T |
16257296 |
tccacttgcatccaactaccctttggtgtttaggtagctttacaagtttccaagtttggttcttttcca |
16257364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 451 - 519
Target Start/End: Complemental strand, 16626852 - 16626784
Alignment:
| Q |
451 |
tccacttccatccaactaccctttgatccttaggtagtcctacaagttttcaagtttgattcttctcca |
519 |
Q |
| |
|
||||||| ||||||||||||||||| | |||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
16626852 |
tccacttgcatccaactaccctttggtgtttaggtagcttcacaagttttcaagtttggttcttttcca |
16626784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University