View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17355_low_10 (Length: 310)

Name: NF17355_low_10
Description: NF17355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17355_low_10
NF17355_low_10
[»] scaffold1974 (1 HSPs)
scaffold1974 (120-197)||(24-101)
[»] scaffold1878 (2 HSPs)
scaffold1878 (120-197)||(1173-1250)
scaffold1878 (135-197)||(1-63)
[»] scaffold0290 (1 HSPs)
scaffold0290 (120-197)||(8936-9013)
[»] chr6 (1 HSPs)
chr6 (120-196)||(34083622-34083698)
[»] chr2 (2 HSPs)
chr2 (120-185)||(23178312-23178377)
chr2 (120-185)||(23589569-23589634)


Alignment Details
Target: scaffold1974 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 101 - 24
Alignment:
Q  120 gtgtcaaaatggaatatgcatgatttccattaatttcaatatcattttctttcagcagaaagaaagaacaataatctg 197  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  101 gtgtgaaaatggaatatgcatgatttccattaatttcaatttcattttctttcagcagaaagaaagaacaataatctg 24  T

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Target: scaffold1878 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 1173 - 1250
Alignment:
Q  120 gtgtcaaaatggaatatgcatgatttccattaatttcaatatcattttctttcagcagaaagaaagaacaataatctg 197  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1173 gtgtgaaaatggaatatgcatgatttccattaatttcaatttcattttctttcagcagaaagaaagaacaataatctg 1250  T

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Target: scaffold1878; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 1 - 63
Alignment:
Q  135 atgcatgatttccattaatttcaatatcattttctttcagcagaaagaaagaacaataatctg 197  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1 atgcatgatttccattaatttcaatttcattttctttcagcagaaagaaagaacaataatctg 63  T

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Target: scaffold0290 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 9013 - 8936
Alignment:
Q  120 gtgtcaaaatggaatatgcatgatttccattaatttcaatatcattttctttcagcagaaagaaagaacaataatctg 197  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9013 gtgtgaaaatggaatatgcatgatttccattaatttcaatttcattttctttcagcagaaagaaagaacaataatctg 8936  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 34083698 - 34083622
Alignment:
Q  120 gtgtcaaaatggaatatgcatgatttccattaatttcaatatcattttctttcagcagaaagaaagaacaataatct 196  Q
    |||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  34083698 gtgtgaaaatggaatatgcatgatttccattaatttcattttcattttctttcagcagaaagaaagaacaataatct 34083622  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 23178312 - 23178377
Alignment:
Q  120 gtgtcaaaatggaatatgcatgatttccattaatttcaatatcattttctttcagcagaaagaaag 185  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23178312 gtgtgaaaatggaatatgcatgatttccattaatttcaatttcattttctttcagcagaaagaaag 23178377  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 23589569 - 23589634
Alignment:
Q  120 gtgtcaaaatggaatatgcatgatttccattaatttcaatatcattttctttcagcagaaagaaag 185  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23589569 gtgtgaaaatggaatatgcatgatttccattaatttcaatttcattttctttcagcagaaagaaag 23589634  T

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