View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17355_low_17 (Length: 248)
Name: NF17355_low_17
Description: NF17355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17355_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 4832498 - 4832644
Alignment:
| Q |
18 |
gtgagacttggatattcattcaacccaagcatgctaaccttgctttggcgcattaattgaaaacaacttgagatttattcagccattgatcacacaagat |
117 |
Q |
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| T |
4832498 |
gtgagacttggatattcattcaacccaagcatgctaaccttgctttggcgtattaattgaaaacaacttgagatttattcagccattgatcacacaagat |
4832597 |
T |
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| Q |
118 |
ccaatcaatttcaaagggcttcaaaacagaacacccagccacaatga |
164 |
Q |
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| T |
4832598 |
ccaatcaatttcaaagggcttcaaaacagaacacccagccacaatga |
4832644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 69 - 154
Target Start/End: Original strand, 4831146 - 4831232
Alignment:
| Q |
69 |
attaattgaaaacaacttgagatttattcagcc-attgatcacacaagatccaatcaatttcaaagggcttcaaaacagaacaccca |
154 |
Q |
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| T |
4831146 |
attaattgaaaataacttgagatttattcagcccattgatcacacaagatccaatcaatttcaaagggcttcaaaagagaacaccca |
4831232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 4833936 - 4834020
Alignment:
| Q |
156 |
ccacaatgaatcaaagggctcgtgcacattgagttaacattattaaaacttcatggagtacttagtaatatcctatcattcttctctc |
243 |
Q |
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| T |
4833936 |
ccacaatgaatcaaagggctcatgtacattgagttaacatta---aaacttcatggagtacttactaatatcctatcattcttttctc |
4834020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 4831667 - 4831703
Alignment:
| Q |
197 |
attaaaacttcatggagtacttagtaatatcctatca |
233 |
Q |
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| T |
4831667 |
attaaaatttcatggagtacttagtaatatcctatca |
4831703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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