View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17355_low_2 (Length: 531)
Name: NF17355_low_2
Description: NF17355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17355_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 15 - 515
Target Start/End: Complemental strand, 700358 - 699858
Alignment:
| Q |
15 |
aggaagtacatatataacctcagttaacgcaagcggagacctaagtggaaggccgatcaaatcatgacctgtgagctcaagcaagcaagtgggttcctga |
114 |
Q |
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| T |
700358 |
aggaagtacaaatataacctcagttaacgcaagcggagacctaagtagaaggccgatcaaatcatgacctgtgagctcaagcaagcaagtgggttcctga |
700259 |
T |
|
| Q |
115 |
ggtactcttgagtggttctggtaagcaaggttaagtgctgctctatgtgtaagaacaaagacctcagtttcagtgatttcaaatgctccatattttccat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
700258 |
ggtactcttgagtggttctggtaagcaaggttaagtgctgctctatgtgtaagaacaaagacctcagtttcagtgatttcaaatgctccatattttccat |
700159 |
T |
|
| Q |
215 |
caggcaaaatccatgcatttgtttgaccatacatagtctcgggtctcaacatcgcagcagcaagaaaaaccttctttccttcaagagccttaaatttatc |
314 |
Q |
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| T |
700158 |
caggcaaaacccatgcatttgtttgaccatacatagtctcgggtctcaacgtcgcagcagcaagaaaaaccttctttccttcaagagccttaaatttatc |
700059 |
T |
|
| Q |
315 |
aggaaaaggcgataccaactccatcttgataatcgtatactcttgaggctgaacaccttcaccactagccctatcatgatcagcacacggttgtccatcc |
414 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
700058 |
aggaaaaggcgataccaactccatcttgataatcatatactcttgaggctgaacaccttcaccactagccctatcatgatcagcacacggttgtccatcc |
699959 |
T |
|
| Q |
415 |
aaaggcgaaaaaattgtatacctaacatctttaacaaccttccccaatgacttcaatttcctcatttgccacctaacaaaagaatcaaaataagggttca |
514 |
Q |
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| T |
699958 |
aaaggcgaaaaaattgtatacctaacatctttaacaaccttccccaatgacttcaatttcctcatttgccacctaacgaaagaatcaaaataagggttca |
699859 |
T |
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| Q |
515 |
t |
515 |
Q |
| |
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| |
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| T |
699858 |
t |
699858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 61 - 515
Target Start/End: Original strand, 23261811 - 23262265
Alignment:
| Q |
61 |
ggaaggccgatcaaatcatgacctgtgagctcaagcaagcaagtgggttcctgaggtactcttgagtggttctggtaagcaaggttaagtgctgctctat |
160 |
Q |
| |
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||||| ||||||||||| ||||| || ||||||||||| ||||| |||| ||||||||| || ||||| || ||||||||||| ||||| ||||| |||| |
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| T |
23261811 |
ggaagcccgatcaaatcctgacccgtaagctcaagcaaacaagtcggtttctgaggtaccctagagtgattttggtaagcaagattaagcgctgccctat |
23261910 |
T |
|
| Q |
161 |
gtgtaagaacaaagacctcagtttcagtgatttcaaatgctccatattttccatcaggcaaaatccatgcatttgtttgaccatacatagtctcgggtct |
260 |
Q |
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| | | |||||| ||||| |||||| | || ||||| || |||||||| ||||||||||| | ||| |||||||||||||||||||||||||| || || |
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| T |
23261911 |
gcgctacaacaaacacctccgtttcattaatctcaaaagccccatatttcccatcaggcaacacccaagcatttgtttgaccatacatagtctcaggcct |
23262010 |
T |
|
| Q |
261 |
caacatcgcagcagcaagaaaaaccttctttccttcaagagccttaaatttatcaggaaaaggcgataccaactccatcttgataatcgtatactcttga |
360 |
Q |
| |
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|||| |||| ||||||||||||||||||||||| || | | ||||||| || ||||||||||| || |||| ||||||||| ||||||||||||||||| |
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| T |
23262011 |
caacgtcgccgcagcaagaaaaaccttctttccctccaaaaccttaaacttctcaggaaaaggagaaaccacctccatcttaataatcgtatactcttgc |
23262110 |
T |
|
| Q |
361 |
ggctgaacaccttcaccactagccctatcatgatcagcacacggttgtccatccaaaggcgaaaaaattgtatacctaacatctttaacaaccttcccca |
460 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||||| ||||||||||| || |
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| T |
23262111 |
ggctgaacaccttcaccactagccctatcatgatccgcacaaggctgtccatccaatggcgaaaaaactgtatacctaacatccttaacaaccttaccag |
23262210 |
T |
|
| Q |
461 |
atgacttcaatttcctcatttgccacctaacaaaagaatcaaaataagggttcat |
515 |
Q |
| |
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| | |||||| |||||||| |||||||||||||||| |||||||||||| ||||| |
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|
| T |
23262211 |
acgccttcaacttcctcatatgccacctaacaaaagcatcaaaataaggattcat |
23262265 |
T |
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