View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17355_low_21 (Length: 215)

Name: NF17355_low_21
Description: NF17355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17355_low_21
NF17355_low_21
[»] chr8 (12 HSPs)
chr8 (75-199)||(11973931-11974055)
chr8 (108-188)||(17647269-17647349)
chr8 (104-188)||(6811087-6811171)
chr8 (96-188)||(11879860-11879952)
chr8 (96-188)||(11897276-11897368)
chr8 (108-188)||(22909981-22910060)
chr8 (120-188)||(29384089-29384157)
chr8 (118-188)||(31424446-31424516)
chr8 (100-188)||(26879774-26879862)
chr8 (94-157)||(26574925-26574988)
chr8 (124-181)||(1017983-1018040)
chr8 (120-188)||(15231905-15231973)
[»] chr7 (14 HSPs)
chr7 (104-188)||(22687044-22687128)
chr7 (100-188)||(4574994-4575082)
chr7 (113-188)||(10285680-10285755)
chr7 (109-188)||(20570662-20570741)
chr7 (94-152)||(17741902-17741960)
chr7 (108-188)||(5058800-5058880)
chr7 (112-160)||(17808997-17809045)
chr7 (120-188)||(39182440-39182508)
chr7 (108-173)||(1977820-1977885)
chr7 (108-157)||(8329787-8329836)
chr7 (109-150)||(48621470-48621511)
chr7 (120-188)||(11325262-11325330)
chr7 (120-188)||(14055541-14055608)
chr7 (120-188)||(14365569-14365636)
[»] chr6 (11 HSPs)
chr6 (108-188)||(30912183-30912263)
chr6 (94-151)||(20432407-20432464)
chr6 (113-186)||(33592930-33593003)
chr6 (104-188)||(11327339-11327423)
chr6 (108-180)||(2912046-2912118)
chr6 (123-186)||(23898097-23898160)
chr6 (115-188)||(24209481-24209554)
chr6 (108-188)||(19748605-19748685)
chr6 (99-149)||(33593044-33593094)
chr6 (108-188)||(7223787-7223867)
chr6 (99-147)||(18490522-18490570)
[»] chr1 (10 HSPs)
chr1 (120-188)||(32881604-32881672)
chr1 (108-188)||(25146545-25146625)
chr1 (120-188)||(41032550-41032618)
chr1 (124-191)||(47786146-47786212)
chr1 (100-188)||(43741715-43741803)
chr1 (120-188)||(12513555-12513623)
chr1 (127-188)||(30619232-30619292)
chr1 (108-188)||(14074260-14074340)
chr1 (108-156)||(16434781-16434829)
chr1 (109-157)||(39845063-39845111)
[»] chr2 (8 HSPs)
chr2 (113-188)||(19245866-19245941)
chr2 (104-188)||(20063991-20064075)
chr2 (108-188)||(8428494-8428574)
chr2 (120-190)||(15588630-15588700)
chr2 (118-158)||(34167571-34167611)
chr2 (139-188)||(1690512-1690562)
chr2 (108-147)||(16767057-16767097)
chr2 (108-147)||(16767194-16767234)
[»] chr4 (13 HSPs)
chr4 (100-188)||(15982745-15982833)
chr4 (108-190)||(22060524-22060606)
chr4 (119-188)||(18459408-18459477)
chr4 (108-188)||(6346732-6346812)
chr4 (108-188)||(7045216-7045296)
chr4 (113-187)||(46664152-46664226)
chr4 (108-188)||(23064738-23064818)
chr4 (134-188)||(24719866-24719920)
chr4 (134-187)||(21314855-21314908)
chr4 (108-188)||(7452777-7452857)
chr4 (120-188)||(8889501-8889568)
chr4 (108-188)||(9770384-9770464)
chr4 (108-188)||(10394882-10394962)
[»] chr5 (8 HSPs)
chr5 (108-188)||(13341474-13341555)
chr5 (109-188)||(43005636-43005715)
chr5 (108-188)||(27339964-27340044)
chr5 (115-187)||(30804207-30804279)
chr5 (107-188)||(16417247-16417327)
chr5 (121-184)||(19979853-19979916)
chr5 (131-188)||(26021606-26021663)
chr5 (85-137)||(16417149-16417200)
[»] chr3 (16 HSPs)
chr3 (99-188)||(15806225-15806314)
chr3 (120-188)||(3449087-3449155)
chr3 (120-188)||(41671463-41671531)
chr3 (101-188)||(9719973-9720060)
chr3 (99-149)||(52519834-52519884)
chr3 (109-186)||(13006098-13006174)
chr3 (108-188)||(10872492-10872572)
chr3 (108-188)||(17064579-17064659)
chr3 (113-187)||(27676713-27676787)
chr3 (104-188)||(20766678-20766762)
chr3 (120-188)||(25870099-25870167)
chr3 (104-188)||(28746044-28746128)
chr3 (113-187)||(39428184-39428258)
chr3 (120-188)||(8155906-8155974)
chr3 (124-188)||(15515035-15515099)
chr3 (104-164)||(30727660-30727720)
[»] scaffold0007 (1 HSPs)
scaffold0007 (85-149)||(220433-220497)
[»] scaffold0603 (1 HSPs)
scaffold0603 (108-183)||(8741-8816)
[»] scaffold0048 (1 HSPs)
scaffold0048 (94-188)||(61091-61185)
[»] scaffold0186 (1 HSPs)
scaffold0186 (108-188)||(8713-8793)
[»] scaffold0028 (1 HSPs)
scaffold0028 (108-188)||(145860-145940)


Alignment Details
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 75 - 199
Target Start/End: Complemental strand, 11974055 - 11973931
Alignment:
Q  75 agcatctaggctttaagtcagttaggtagaattcttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcc 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11974055 agcatctaggctttaagtcagttaggtagaattcttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcc 11973956  T
Q  175 cgattttgacaaccataacttatgt 199  Q
     ||||||||||||||||||||||||    
T  11973955 tgattttgacaaccataacttatgt 11973931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 17647269 - 17647349
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||| |||| |||||||||||||||||| |||||||||||  |||||||| | |||| |||||||||||||||| ||||||    
T  17647269 cttcgattttgattgcgattttatgattgtcgattttgctcatctctttcgacctgaagcaaaatcccgattttaacaacc 17647349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 188
Target Start/End: Original strand, 6811087 - 6811171
Alignment:
Q  104 aattcttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||||||| |||| | ||||||||||| |||| ||||||||||| ||||||||| || |||  |||| | |||||||||||||||    
T  6811087 aattcttcgattttggttgcgattttacgattgtcgattttgctcttctctttcgatttgaaacaaagttccgattttgacaacc 6811171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 188
Target Start/End: Original strand, 11879860 - 11879952
Alignment:
Q  96 ttaggtagaattcttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    ||||||| ||| |||| |||| ||||||||||||| || || ||||||| |||||| ||||  | |||| | |||||||||||||||||||||    
T  11879860 ttaggtaaaatccttcgattttgattgcgattttacgagttccgattttactattcccttttgacctgaagtaaaatcccgattttgacaacc 11879952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 188
Target Start/End: Original strand, 11897276 - 11897368
Alignment:
Q  96 ttaggtagaattcttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    ||||||| ||| |||| |||| ||||||||||||| || || ||||||| |||||| ||||  | |||| | |||||||||||||||||||||    
T  11897276 ttaggtaaaatccttcgattttgattgcgattttacgagttccgattttactattcccttttgacctgaagtaaaatcccgattttgacaacc 11897368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 22910060 - 22909981
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    ||||||||||| ||||||||||| |||| |||||||| || ||||||||| |  ||||| ||||| |||||||||||||||    
T  22910060 cttcaatttcggttgcgattttacgattgtcgatttttctcttctctttcgacatgatgtaaaat-ccgattttgacaacc 22909981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 29384157 - 29384089
Alignment:
Q  120 ttgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    ||||||||||| |||| |||||||| || || |||||| | |||| |||||||||||||||||||||||    
T  29384157 ttgcgattttacgattgtcgatttttctcttttctttcgacctgaagcaaaatcccgattttgacaacc 29384089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 31424446 - 31424516
Alignment:
Q  118 gattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    ||||||||||||| |||| |||||||||||  |||||||| | |||| | |||||| ||||||||||||||    
T  31424446 gattgcgattttacgattgtcgattttgctcatctctttcgacctgaagtaaaatctcgattttgacaacc 31424516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 26879774 - 26879862
Alignment:
Q  100 gtagaattcttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    ||||||| | ||||||| ||||||||||||| |||||| |||||||||  || ||||||| ||||   |||||| ||| ||||||||||    
T  26879774 gtagaatccatcaattttgattgcgattttacgatttttgattttgctgatccctttcaacctgaactaaaatcacgactttgacaacc 26879862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 26574988 - 26574925
Alignment:
Q  94 agttaggtagaattcttcaatttcgattgcgattttatgattttcgattttgctattctctttc 157  Q
    ||||||||| ||| ||||||||| ||||||||||||| ||| ||| ||||| ||||| ||||||    
T  26574988 agttaggtaaaatccttcaattttgattgcgattttacgatattcaatttttctattgtctttc 26574925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 1018040 - 1017983
Alignment:
Q  124 gattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgatttt 181  Q
    |||||||||||||| ||||| ||| ||| | ||||| |||| ||||||||||||||||    
T  1018040 gattttatgatttttgatttcgctcttccccttcaacctgaagcaaaatcccgatttt 1017983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 15231905 - 15231973
Alignment:
Q  120 ttgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    ||||||||||| |||| ||||||||||| ||||||||| |  ||| |||||||| ||| ||| ||||||    
T  15231905 ttgcgattttacgattgtcgattttgctcttctctttcgacttgaagcaaaatctcgaatttaacaacc 15231973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 104 - 188
Target Start/End: Complemental strand, 22687128 - 22687044
Alignment:
Q  104 aattcttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    ||||||||||||| | ||| ||||||| |||| ||||||||||| ||||||||| |||||| |||||||||||||||| ||||||    
T  22687128 aattcttcaattttggttgtgattttacgattctcgattttgctcttctctttcgatctgaagcaaaatcccgattttaacaacc 22687044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 4574994 - 4575082
Alignment:
Q  100 gtagaattcttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||||||||||  |||| ||||||||||||| |||||| |||||| |||||| ||||||| |||| | |||||| | ||||||||||||    
T  4574994 gtagaattctttgattttgattgcgattttacgatttttgattttactattccctttcaacctgaagaaaaatctcaattttgacaacc 4575082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 10285755 - 10285680
Alignment:
Q  113 atttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||| ||||||||||||| |||| | |||||| || ||||||||| | |||| | |||||||||||||||||||||    
T  10285755 attttgattgcgattttacgattgttgatttttctcttctctttcgacctgaagtaaaatcccgattttgacaacc 10285680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 188
Target Start/End: Complemental strand, 20570741 - 20570662
Alignment:
Q  109 ttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||||||| |||||||||||||||| | || |||||| ||||| ||||||| |||| | | | |||||||||||||||||    
T  20570741 ttcaattttgattgcgattttatgagtctcaattttgttattccctttcaacctgaagtagagtcccgattttgacaacc 20570662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 17741902 - 17741960
Alignment:
Q  94 agttaggtagaattcttcaatttcgattgcgattttatgattttcgattttgctattct 152  Q
    ||||| ||| ||| ||||||||| |||||| |||||| |||||||||||||||||||||    
T  17741902 agttaagtaaaatccttcaattttgattgcaattttacgattttcgattttgctattct 17741960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 5058800 - 5058880
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||| |||| |||||| |||||| || || |||||||||||||| ||||  |||||| | ||| |||||||||||||||||    
T  5058800 cttcgattttgattgcaattttacgaattccgattttgctattcccttttgatctgaagtaaagtcccgattttgacaacc 5058880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 17809045 - 17808997
Alignment:
Q  112 aatttcgattgcgattttatgattttcgattttgctattctctttcaat 160  Q
    ||||| ||||||||||||| ||||||||||||||||||||  |||||||    
T  17809045 aattttgattgcgattttacgattttcgattttgctattccatttcaat 17808997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 39182440 - 39182508
Alignment:
Q  120 ttgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    ||||||||||| |||| |||||||| || ||||||||  | |||| |||||||| ||||||||||||||    
T  39182440 ttgcgattttacgattgtcgatttttctcttctctttggaactgaagcaaaatcacgattttgacaacc 39182508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 1977820 - 1977885
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatc 173  Q
    |||| |||| ||||||||||||| |||| |||||||| || ||||||||| | |||| ||||||||    
T  1977820 cttcgattttgattgcgattttacgattgtcgatttttctcttctctttcgacctgaagcaaaatc 1977885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 8329836 - 8329787
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctctttc 157  Q
    ||||||||| |||||| ||||||||||| || |||||| |||||||||||    
T  8329836 cttcaattttgattgcaattttatgattgtcaattttgttattctctttc 8329787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 48621511 - 48621470
Alignment:
Q  109 ttcaatttcgattgcgattttatgattttcgattttgctatt 150  Q
    ||||||||| |||||||||||| |||||||||||||| ||||    
T  48621511 ttcaatttcaattgcgattttacgattttcgattttgttatt 48621470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 11325262 - 11325330
Alignment:
Q  120 ttgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    ||||||||||| |||| ||||||||||| ||||||||  |  ||| |||| ||||| ||||||||||||    
T  11325262 ttgcgattttacgattgtcgattttgctcttctcttttgacgtgaagcaagatcccaattttgacaacc 11325330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 14055541 - 14055608
Alignment:
Q  120 ttgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||||||||||  ||| |||||||||||  |||||||| | |||| ||||||| |||||||||||||||    
T  14055541 ttgcgattttaccattgtcgattttgctcatctctttcgacctgaagcaaaat-ccgattttgacaacc 14055608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 14365569 - 14365636
Alignment:
Q  120 ttgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||||||||||  ||| |||||||||||  |||||||| | |||| ||||||| |||||||||||||||    
T  14365569 ttgcgattttaccattgtcgattttgctcatctctttcgacctgaagcaaaat-ccgattttgacaacc 14365636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 30912263 - 30912183
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    ||||||||| | ||| ||||||| |||| ||||||||||||||||||||||| |||| ||||||| |||||||||||||||    
T  30912263 cttcaattttggttgagattttacgattatcgattttgctattctctttcaacctgaagcaaaattccgattttgacaacc 30912183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 20432464 - 20432407
Alignment:
Q  94 agttaggtagaattcttcaatttcgattgcgattttatgattttcgattttgctattc 151  Q
    ||||| ||| ||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  20432464 agttaagtaaaattcttcaattttgattgcgattttacgattttcgattttgctattc 20432407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 33593003 - 33592930
Alignment:
Q  113 atttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaa 186  Q
    ||||||||||| |||||| ||||||| |||||| ||||| ||||| || ||| |||||||||||||||||||||    
T  33593003 atttcgattgcaattttacgattttcaattttgttattccctttcgatatgaagcaaaatcccgattttgacaa 33592930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 188
Target Start/End: Complemental strand, 11327423 - 11327339
Alignment:
Q  104 aattcttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||||||| |||| ||||||||||||| || | ||||||||||||||| ||||||| |||| | |||  ||||||||||||||||    
T  11327423 aattcttcgattttgattgcgattttacgagtctcgattttgctattccctttcaacctgaagtaaagccccgattttgacaacc 11327339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 180
Target Start/End: Complemental strand, 2912118 - 2912046
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattt 180  Q
    ||||||||||||||  ||||||| |||| ||||||| ||| ||||||||||| |||| |||||||||| ||||    
T  2912118 cttcaatttcgattatgattttacgattatcgatttcgctcttctctttcaacctgaagcaaaatcccaattt 2912046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 23898097 - 23898160
Alignment:
Q  123 cgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaa 186  Q
    |||||||| |||| ||||||||||| ||||| ||| | |||| |||||||||||||||||||||    
T  23898097 cgattttacgattgtcgattttgctcttctcattcgacctgaagcaaaatcccgattttgacaa 23898160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 24209554 - 24209481
Alignment:
Q  115 ttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    ||||||| | |||||||||||||||||| |||||||| ||||| ||| || ||||||||   ||||||||||||    
T  24209554 ttcgatttcaattttatgattttcgattctgctattccctttcgatcggaagcaaaatcttaattttgacaacc 24209481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 19748605 - 19748685
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||| |||| ||||||||||||| || |  |||||||||||||| ||||||| ||||   ||| |||||||||||||||||    
T  19748605 cttcgattttgattgcgattttacgaatcccgattttgctattccctttcaacctgaattaaagtcccgattttgacaacc 19748685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 33593094 - 33593044
Alignment:
Q  99 ggtagaattcttcaatttcgattgcgattttatgattttcgattttgctat 149  Q
    |||||||| | || |||| |||||||||||||||||||| |||||||||||    
T  33593094 ggtagaatccatcgattttgattgcgattttatgatttttgattttgctat 33593044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 7223787 - 7223867
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||| |||| |||||| |||||| || |  |||||||||||||| ||||| | |||| | ||| |||||||||||||||||    
T  7223787 cttcgattttgattgcaattttacgagtcccgattttgctattccctttcgacctgaagtaaagtcccgattttgacaacc 7223867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 18490570 - 18490522
Alignment:
Q  99 ggtagaattcttcaatttcgattgcgattttatgattttcgattttgct 147  Q
    |||||||| | ||||||| ||||||||||||| || |||||||||||||    
T  18490570 ggtagaatccatcaattttgattgcgattttacgaatttcgattttgct 18490522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 32881604 - 32881672
Alignment:
Q  120 ttgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    ||||||||||| |||| ||||||||||| |||||||||||||||| |||||||||||||||||| ||||    
T  32881604 ttgcgattttacgattgtcgattttgcttttctctttcaatctgaagcaaaatcccgattttgaaaacc 32881672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 25146625 - 25146545
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||| |||| ||||||||||||| ||||| |||||||||||||| ||||||| |||| | ||| ||| |||||||||||||    
T  25146625 cttcgattttgattgcgattttacgatttccgattttgctattccctttcaacctgaagtaaagtcctgattttgacaacc 25146545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 41032618 - 41032550
Alignment:
Q  120 ttgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    ||||||||||| |||| || |||||||| ||||||||||| |||| | |||||||| ||||||||||||    
T  41032618 ttgcgattttacgattatcaattttgctcttctctttcaacctgaagtaaaatccctattttgacaacc 41032550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 191
Target Start/End: Original strand, 47786146 - 47786212
Alignment:
Q  124 gattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaaccata 191  Q
    ||||||| |||| ||||||||||| ||||||||||| || | | ||||||||||||||||||||||||    
T  47786146 gattttacgattgtcgattttgctcttctctttcaacctaaag-aaaatcccgattttgacaaccata 47786212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 43741803 - 43741715
Alignment:
Q  100 gtagaattcttcaatttcgattgcgattttatgattttc-gattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    ||||||| ||| ||||| | ||||||||||| ||||||  || ||||||||||||||||||||| | |||||||| |||||||| |||||    
T  43741803 gtagaatcctttaattttggttgcgatttta-gattttgtgagtttgctattctctttcaatctcaagcaaaatctcgattttggcaacc 43741715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 12513555 - 12513623
Alignment:
Q  120 ttgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||||||||||  ||| ||||||||||| ||||||||  | |||| |||||||||| ||||||||||||    
T  12513555 ttgcgattttacaattgtcgattttgctcttctcttttgacctgaagcaaaatcccaattttgacaacc 12513623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 30619232 - 30619292
Alignment:
Q  127 tttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||| |||| ||||||||||| ||||||||| | |||| | |||||||||||||||||||||    
T  30619232 tttacgattgtcgattttgctcttctctttcgacctgaag-aaaatcccgattttgacaacc 30619292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 14074340 - 14074260
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||| |||| ||||| |||||||||| || | |||||||||||| ||||| | |||| | ||| ||| |||||||||||||    
T  14074340 cttcgattttgattgtgattttatgagttccaattttgctattccctttcgacctgaagtaaagtcctgattttgacaacc 14074260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 16434781 - 16434829
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctcttt 156  Q
    |||| |||| |||||| |||||| |||||||||||||||||||| ||||    
T  16434781 cttcgattttgattgcaattttacgattttcgattttgctattcccttt 16434829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 39845111 - 39845063
Alignment:
Q  109 ttcaatttcgattgcgattttatgattttcgattttgctattctctttc 157  Q
    ||||||||  ||||| ||||||  |||||||||||||||||||||||||    
T  39845111 ttcaattttaattgcaattttacaattttcgattttgctattctctttc 39845063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 19245866 - 19245941
Alignment:
Q  113 atttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||| ||||||||||||| |||||| ||||||||||||| |||||||  ||| |||||||||||||||||||||||    
T  19245866 attttgattgcgattttacgatttttgattttgctattccctttcaacttgaagcaaaatcccgattttgacaacc 19245941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 188
Target Start/End: Original strand, 20063991 - 20064075
Alignment:
Q  104 aattcttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||||||| |||| ||||||||||||| || | ||||||||||||||| ||||||| |||| | |||  ||||||||||||||||    
T  20063991 aattcttcgattttgattgcgattttacgagtctcgattttgctattccctttcaacctgaagtaaagccccgattttgacaacc 20064075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 8428494 - 8428574
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||| |||| |||||||||||||  ||||| |||||| |||||| ||||| | || | |||||||||||||||||||||||    
T  8428494 cttcgattttgattgcgattttagaatttttgatttttctattccctttcgacctaaagcaaaatcccgattttgacaacc 8428574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 15588700 - 15588630
Alignment:
Q  120 ttgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaaccat 190  Q
    |||||||||||||||| |||||||| || ||||||||| | |||| |||||||| | || |||||||||||    
T  15588700 ttgcgattttatgattgtcgatttttcttttctctttcgacctgaagcaaaatctcaatattgacaaccat 15588630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 34167571 - 34167611
Alignment:
Q  118 gattgcgattttatgattttcgattttgctattctctttca 158  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  34167571 gattgcgattttacgattttcgattttgctattccctttca 34167611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 1690562 - 1690512
Alignment:
Q  139 gattttgctattctctttcaatctgatgcaaaa-tcccgattttgacaacc 188  Q
    ||||||||| ||||||||||| |||| |||||| |||||||||||||||||    
T  1690562 gattttgctcttctctttcaacctgaagcaaaaatcccgattttgacaacc 1690512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 16767057 - 16767097
Alignment:
Q  108 cttcaatttcgattgcgattttatga-ttttcgattttgct 147  Q
    ||||||||| |||||||||||||||| ||||||||||||||    
T  16767057 cttcaattttgattgcgattttatgatttttcgattttgct 16767097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 16767194 - 16767234
Alignment:
Q  108 cttcaatttcgattgcgattttatga-ttttcgattttgct 147  Q
    ||||||||| |||||||||||||||| ||||||||||||||    
T  16767194 cttcaattttgattgcgattttatgatttttcgattttgct 16767234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 15982833 - 15982745
Alignment:
Q  100 gtagaattcttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    ||||||| ||||||| | |||||| |||||||| |||||||| ||||||| | ||||| |||||| |||||||||| ||||||||||||    
T  15982833 gtagaatccttcaatcttgattgcaattttatgcttttcgatcttgctatcccctttcgatctgaagcaaaatcccaattttgacaacc 15982745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 190
Target Start/End: Complemental strand, 22060606 - 22060524
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaaccat 190  Q
    |||| |||||||||| |||||||| ||| | ||||||||||||| |||||||||| |  ||||||| |||||| |||||||||    
T  22060606 cttcgatttcgattgtgattttataattattgattttgctattccctttcaatctaaaacaaaatcacgatttcgacaaccat 22060524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 18459477 - 18459408
Alignment:
Q  119 attgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||||||||||| |||| ||||||||||| ||  ||||||| |||| |||||||| ||||||||||||||    
T  18459477 attgcgattttacgattgtcgattttgctctttcctttcaacctgaagcaaaatctcgattttgacaacc 18459408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 6346812 - 6346732
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||| |||| ||||| ||||||| |||||||||||||||| ||| ||||| | |||| ||||| | |||||||||||||||    
T  6346812 cttcgattttgattgtgattttacgattttcgattttgctcttccctttcgacctgaagcaaatttccgattttgacaacc 6346732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 7045216 - 7045296
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||| |||| |||||||||||||||||||| ||||||||| ||| ||||| | |||| | ||||| || ||||||||||||    
T  7045216 cttcgattttgattgcgattttatgatttttgattttgctcttccctttcgacctgaagtaaaattcctattttgacaacc 7045296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 46664226 - 46664152
Alignment:
Q  113 atttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaac 187  Q
    |||| ||||||||||||  |||||||||||||||||||   |||| | |||| |||||||||| |||||||||||    
T  46664226 attttgattgcgattttccgattttcgattttgctatttcttttcgacctgaagcaaaatcccaattttgacaac 46664152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 23064818 - 23064738
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    ||||||||| ||||||||||||| || || |||||| | ||||| ||||| | |||| | ||| |||||||||||||||||    
T  23064818 cttcaattttgattgcgattttacgagttccgatttcgttattccctttcgacctgaagtaaagtcccgattttgacaacc 23064738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 24719866 - 24719920
Alignment:
Q  134 ttttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||||||||||||| ||| ||||| | |||| |||||||| ||||||||||||||    
T  24719866 ttttcgattttgctcttccctttcgacctgaagcaaaatctcgattttgacaacc 24719920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 21314908 - 21314855
Alignment:
Q  134 ttttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaac 187  Q
    |||||||||||||||| | |||||||||||| |||||||| | || ||||||||    
T  21314908 ttttcgattttgctatcccctttcaatctgaagcaaaatcacaatgttgacaac 21314855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 7452777 - 7452857
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||| |||| ||||||||||||| ||||||| | ||| || ||| ||||| | |||| |||||||||  ||||||||||||    
T  7452777 cttcgattttgattgcgattttacgattttcaacttttctcttccctttcgacctgaagcaaaatcctaattttgacaacc 7452857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 8889501 - 8889568
Alignment:
Q  120 ttgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||||||||||  ||| || |||||||| | ||||||| | |||| |||||||||||||||||||||||    
T  8889501 ttgcgattttacaattgtcaattttgctct-ctctttcgacctgaagcaaaatcccgattttgacaacc 8889568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 9770384 - 9770464
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||| |||| ||||||||||||| || |  |||||||||||||| ||||| | || | | ||| |||||||||||||||||    
T  9770384 cttcgattttgattgcgattttacgagtcccgattttgctattccctttcgacctaaagtaaagtcccgattttgacaacc 9770464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 10394882 - 10394962
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||| |||| ||||||||||||| |||||| ||||||||| ||   ||||||  ||| ||||||| || ||||||||||||    
T  10394882 cttcgattttgattgcgattttacgatttttgattttgctctttcttttcaacttgaagcaaaattccaattttgacaacc 10394962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 13341555 - 13341474
Alignment:
Q  108 cttcaatttcgattgcgattttatgatttt-cgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    ||||||||||| ||||||||||| |||||| | ||||| |||||| ||||| || ||| |||||||||||||||||||||||    
T  13341555 cttcaatttcgtttgcgattttacgatttttcaatttttctattccctttcgatttgaagcaaaatcccgattttgacaacc 13341474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 109 - 188
Target Start/End: Complemental strand, 43005715 - 43005636
Alignment:
Q  109 ttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||||||| |||||||||||||  |||||||| ||| |||||  ||||| |||| | |||||||||||||||||||||||    
T  43005715 ttcaattttgattgcgattttacaattttcgaattttctatttcctttcgatctaaagcaaaatcccgattttgacaacc 43005636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 27340044 - 27339964
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||| |||| ||||||||||| | |||||||||||||||||||| |||||||  ||| | ||| | |||||||||||||||    
T  27340044 cttcgattttgattgcgatttcacgattttcgattttgctattccctttcaacttgaagtaaagttccgattttgacaacc 27339964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 187
Target Start/End: Original strand, 30804207 - 30804279
Alignment:
Q  115 ttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaac 187  Q
    ||||||| ||||||||||||||| ||||||| ||||||||||| | |||  |||||||| | |||||||||||    
T  30804207 ttcgattacgattttatgattttggattttgttattctctttcgacctgtagcaaaatctcaattttgacaac 30804279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 16417247 - 16417327
Alignment:
Q  107 tcttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    ||||| ||||||||||||||||||||||||| ||||||| |||   |||||||| ||| ||||||| | | |||||||||||    
T  16417247 tcttcgatttcgattgcgattttatgatttt-gattttgttatctcctttcaatttgaagcaaaattctggttttgacaacc 16417327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 184
Target Start/End: Original strand, 19979853 - 19979916
Alignment:
Q  121 tgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgac 184  Q
    |||| ||||| |||| ||||||||||| ||||||||  | |||| |||||||||||||||||||    
T  19979853 tgcgtttttacgattgtcgattttgctcttctcttttgacctgaagcaaaatcccgattttgac 19979916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 26021606 - 26021663
Alignment:
Q  131 tgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    ||||||||||||||||| ||| ||||    |||| |||||||||||||||||||||||    
T  26021606 tgattttcgattttgctcttcccttttggcctgaagcaaaatcccgattttgacaacc 26021663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 16417149 - 16417200
Alignment:
Q  85 ctttaagtcagttaggtagaattcttcaatttcgattgcgattttatgatttt 137  Q
    |||||||||| || ||||||| | ||| |||||||||||||||||||||||||    
T  16417149 ctttaagtcattttggtagaact-ttcgatttcgattgcgattttatgatttt 16417200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 15806314 - 15806225
Alignment:
Q  99 ggtagaattcttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||||||| | ||||||  |||| ||||| ||||||||||||||||||| ||| ||||| | |||| |||||||| ||||||||||||||    
T  15806314 ggtagaatccatcaattctgattacgattgtatgattttcgattttgcttttccctttcgagctgaagcaaaatctcgattttgacaacc 15806225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 3449155 - 3449087
Alignment:
Q  120 ttgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    ||||||||||| |||| ||||||||||| ||||||||||| || | |||||||||| ||||||||||||    
T  3449155 ttgcgattttacgattgtcgattttgctcttctctttcaacctaaagcaaaatcccaattttgacaacc 3449087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 41671463 - 41671531
Alignment:
Q  120 ttgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||||||||||  ||| ||||||||||| ||||||||| | |||| |||||||||||||||||||||||    
T  41671463 ttgcgattttacaattatcgattttgctcttctctttcgacctgaagcaaaatcccgattttgacaacc 41671531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 9720060 - 9719973
Alignment:
Q  101 tagaattcttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||||| |||| |||| | ||||||||||||| ||| |||||| ||||| || ||||||||||| |||||||| ||||||| ||||||    
T  9720060 tagaatccttcgattttggttgcgattttatgttttacgatttcgctatcctgtttcaatctgaagcaaaatctcgatttttacaacc 9719973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 52519834 - 52519884
Alignment:
Q  99 ggtagaattcttcaatttcgattgcgattttatgattttcgattttgctat 149  Q
    ||||||||||||| ||||||||||||||||||  |||||||||||||||||    
T  52519834 ggtagaattcttctatttcgattgcgattttacaattttcgattttgctat 52519884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 13006098 - 13006174
Alignment:
Q  109 ttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaa 186  Q
    |||||||| ||||||||||||| ||||||| |||||||||||| ||||| | || | || ||||||||||||||||||    
T  13006098 ttcaattttgattgcgattttacgattttcaattttgctattccctttcgacctaaagc-aaatcccgattttgacaa 13006174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 10872572 - 10872492
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    ||||||||| |||||||||||||||||||| |||||| || ||| ||||  | |||| | ||||||| |||||||||||||    
T  10872572 cttcaattttgattgcgattttatgatttttgatttttctcttcccttttgacctgaagtaaaatcctgattttgacaacc 10872492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 17064579 - 17064659
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||| |||| ||||||||||||| |||| ||||||||| | || |||||| | |||| |||||||||| ||||||||||||    
T  17064579 cttcgattttgattgcgattttacgattgtcgattttgatcttttctttcgacctgaagcaaaatcccaattttgacaacc 17064659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 27676713 - 27676787
Alignment:
Q  113 atttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaac 187  Q
    |||| ||||||||||||| |||||||||||||||| ||| ||||| |  ||| ||||||||| |||||| |||||    
T  27676713 attttgattgcgattttaagattttcgattttgctcttccctttcgacttgaagcaaaatcctgattttaacaac 27676787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 188
Target Start/End: Complemental strand, 20766762 - 20766678
Alignment:
Q  104 aattcttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||| ||| |||| ||||||||||||| || | |||||||||||| |||||||| |  ||| | ||| |||||||||||||||||    
T  20766762 aatttttcgattttgattgcgattttacgagtctcgattttgctactctctttcgagttgaagtaaagtcccgattttgacaacc 20766678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 25870167 - 25870099
Alignment:
Q  120 ttgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    ||||||||||| |||| |||||||| || ||||||||| | || | |||||||| ||||||||||||||    
T  25870167 ttgcgattttacgattgtcgattttactcttctctttcgacctaaagcaaaatctcgattttgacaacc 25870099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 188
Target Start/End: Original strand, 28746044 - 28746128
Alignment:
Q  104 aattcttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||||||| |||| ||||||||||||| || |  ||||||||||||| |||||| | |||| | ||| |||| ||||||||||||    
T  28746044 aattcttcgattttgattgcgattttacgagtcccgattttgctattttctttcgacctgaagtaaagtcccaattttgacaacc 28746128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 39428184 - 39428258
Alignment:
Q  113 atttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaac 187  Q
    |||| |||||||||||||||| |  |||||||||||||| ||||||| |  | | ||| ||||||||||||||||    
T  39428184 attttgattgcgattttatgagtcccgattttgctattccctttcaaccgcaagtaaagtcccgattttgacaac 39428258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 8155974 - 8155906
Alignment:
Q  120 ttgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||||||||||||||| || |||||||| ||||||| | | |||| ||||||| |  ||||||||||||    
T  8155974 ttgcgattttatgattgtccattttgctcttctcttaccacctgaagcaaaattctaattttgacaacc 8155906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 15515099 - 15515035
Alignment:
Q  124 gattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||||||  ||| ||||||||| |  |||||||||| |||| |||||||||||||||| ||||||    
T  15515099 gattttacaattgtcgattttggtcatctctttcaacctgaagcaaaatcccgattttaacaacc 15515035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 30727720 - 30727660
Alignment:
Q  104 aattcttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctga 164  Q
    ||||| || |||| ||||||||||||| || | ||||||||||||||| ||||||| ||||    
T  30727720 aattcatcgattttgattgcgattttaggagtctcgattttgctattccctttcaacctga 30727660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 220497 - 220433
Alignment:
Q  85 ctttaagtcagttaggtagaattcttcaatttcgattgcgattttatgattttcgattttgctat 149  Q
    |||||||||| || |||||||| |||| ||||||||||| |||||| ||||||||||||||||||    
T  220497 ctttaagtcattttggtagaatccttcgatttcgattgcaattttacgattttcgattttgctat 220433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 8816 - 8741
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttga 183  Q
    |||| |||| |||| ||||||||||||||||||||||||| | |  |||||| || | ||||||||||||||||||    
T  8816 cttcgattttgattacgattttatgattttcgattttgctctaccttttcaacctaaagcaaaatcccgattttga 8741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 94 - 188
Target Start/End: Complemental strand, 61185 - 61091
Alignment:
Q  94 agttaggtagaattcttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    ||||| ||| |||||||| |||| ||||| ||||||| ||||||  ||||| || ||||||||  | |||| ||||||||||||||||| |||||    
T  61185 agttaagtaaaattcttcgattttgattgtgattttacgattttaaattttacttttctcttttgacctgaagcaaaatcccgattttggcaacc 61091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 8713 - 8793
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    ||||||||| ||||||||||||| || || |||||||| ||||| ||||| | |||| | ||| |||||||||||| ||||    
T  8713 cttcaattttgattgcgattttacgagttccgattttgttattccctttcgacctgaagtaaagtcccgattttgagaacc 8793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 145860 - 145940
Alignment:
Q  108 cttcaatttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatcccgattttgacaacc 188  Q
    |||| |||| |||||| |||||| ||||||||||||  ||||| |||||| | |||| |||||||| | ||||||||||||    
T  145860 cttcgattttgattgctattttacgattttcgatttaactattttctttcgacctgaagcaaaatctcaattttgacaacc 145940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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