View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17355_low_3 (Length: 484)

Name: NF17355_low_3
Description: NF17355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17355_low_3
NF17355_low_3
[»] chr8 (4 HSPs)
chr8 (35-466)||(37056074-37056503)
chr8 (60-112)||(40175946-40175998)
chr8 (59-112)||(26018511-26018564)
chr8 (59-112)||(40694664-40694717)
[»] chr2 (3 HSPs)
chr2 (60-112)||(42251198-42251250)
chr2 (53-112)||(37810191-37810250)
chr2 (49-98)||(17383801-17383850)
[»] chr4 (2 HSPs)
chr4 (49-112)||(33414038-33414101)
chr4 (59-112)||(53127997-53128050)
[»] chr7 (5 HSPs)
chr7 (59-163)||(47497751-47497852)
chr7 (56-112)||(18089750-18089806)
chr7 (53-112)||(2276322-2276381)
chr7 (45-112)||(12275775-12275842)
chr7 (62-112)||(40134440-40134490)
[»] scaffold0137 (1 HSPs)
scaffold0137 (55-112)||(8228-8284)
[»] chr6 (1 HSPs)
chr6 (53-112)||(11650924-11650983)
[»] chr5 (4 HSPs)
chr5 (53-112)||(3907699-3907758)
chr5 (53-112)||(4190094-4190153)
chr5 (35-112)||(33029520-33029598)
chr5 (60-112)||(27195304-27195356)
[»] chr1 (1 HSPs)
chr1 (53-112)||(34437633-34437691)
[»] chr3 (2 HSPs)
chr3 (59-112)||(14345202-14345255)
chr3 (49-97)||(13540226-13540274)


Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 35 - 466
Target Start/End: Complemental strand, 37056503 - 37056074
Alignment:
Q  35 ttaatttgttaaaatcatatgggtcccaccaaattcatataggtcccacttaatttggtgggactcatgtgaattttattttaacccatcaaagagaata 134  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||    
T  37056503 ttaatttgttaaaatcacatgggtcccaccaaattcatataggtcccacttaatttggtgggactcatttgagttttattttaacccatcaaaaagaata 37056404  T
Q  135 tttaaaaaatatgtgttaaatgtgtgttgatatcattcttctttattatacgaatacaatacaaccatatataatgttagggcattgatgatctaagatt 234  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  37056403 tttaaaaaatatgtgttaaatgtgtattgatatcattcttctatattatacaaatacaatacaaccatatataatgttggggcattgatgatctaagatt 37056304  T
Q  235 ttctccattgaatatggatctaagcgtaatgttatgagttcgaatcctatcattaaaatacagtagtgttaaacttgttgattaggagttttatcat--- 331  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  37056303 ttctccattaaatatggatctaagcgtaatgttatgagttcgaatcctatcattaaaatacagtagtgttaaacttgttgattaggagttttatcatcga 37056204  T
Q  332 -ta-------aactaacttgaaaaattagtttctgcataattgtttgcaaatgatactccattcaca-caagtataagaatatggacccttcactacaac 422  Q
     ||       | ||||||||||||||||||||||              ||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  37056203 gtacagttctacctaacttgaaaaattagtttct--------------aaatgatactcaattcacaccaagtataagaatatggacccttcactacaac 37056118  T
Q  423 aacagatgcttctatcattagaatgactcaggggaatggaaact 466  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  37056117 aacacatgcttctatcattagaatgactcaggggaatggaaact 37056074  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 40175946 - 40175998
Alignment:
Q  60 ccaccaaattcatataggtcccacttaatttggtgggactcatgtgaatttta 112  Q
    |||||||||| |||| || ||||| |||||||||||||| |||||||||||||    
T  40175946 ccaccaaatttatatgggacccacataatttggtgggacccatgtgaatttta 40175998  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 26018511 - 26018564
Alignment:
Q  59 cccaccaaattcatataggtcccacttaatttggtgggactcatgtgaatttta 112  Q
    ||||||||||| |||| || ||||| ||||||| |||||| |||||||||||||    
T  26018511 cccaccaaatttatatgggacccacataatttgatgggacccatgtgaatttta 26018564  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 40694664 - 40694717
Alignment:
Q  59 cccaccaaattcatataggtcccacttaatttggtgggactcatgtgaatttta 112  Q
    ||||||||||  ||||||| ||||| | |||||||||||| |||||||||||||    
T  40694664 cccaccaaatctatataggacccacatgatttggtgggacccatgtgaatttta 40694717  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 42251250 - 42251198
Alignment:
Q  60 ccaccaaattcatataggtcccacttaatttggtgggactcatgtgaatttta 112  Q
    |||||||||| ||||||||||||| |||||||||||||| |||| ||||||||    
T  42251250 ccaccaaatttatataggtcccacataatttggtgggacccatgcgaatttta 42251198  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 37810191 - 37810250
Alignment:
Q  53 atgggtcccaccaaattcatataggtcccacttaatttggtgggactcatgtgaatttta 112  Q
    ||||| ||||||||||| |||| || ||||  |||||||||||||| |||||||||||||    
T  37810191 atgggacccaccaaatttatatgggacccatctaatttggtgggacccatgtgaatttta 37810250  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 17383801 - 17383850
Alignment:
Q  49 tcatatgggtcccaccaaattcatataggtcccacttaatttggtgggac 98  Q
    |||||||||||||||||||||  ||| || ||||| ||||||||||||||    
T  17383801 tcatatgggtcccaccaaatttctatgggacccacataatttggtgggac 17383850  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 33414101 - 33414038
Alignment:
Q  49 tcatatgggtcccaccaaattcatataggtcccacttaatttggtgggactcatgtgaatttta 112  Q
    ||||||||| ||||||||||| ||||||| ||||| | |||||||||||  |||||||||||||    
T  33414101 tcatatgggacccaccaaatttatataggacccacgtgatttggtgggatccatgtgaatttta 33414038  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 53128050 - 53127997
Alignment:
Q  59 cccaccaaattcatataggtcccacttaatttggtgggactcatgtgaatttta 112  Q
    ||||||||||| ||||||| ||||||| || ||||||||| ||||||| |||||    
T  53128050 cccaccaaatttatataggacccacttgatatggtgggacccatgtgagtttta 53127997  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 163
Target Start/End: Original strand, 47497751 - 47497852
Alignment:
Q  59 cccaccaaattcatataggtcccacttaatttggtgggactcatgtgaattttattttaacccatcaaagagaatat-ttaaaaaatatgtgtta-aatg 156  Q
    |||||||||||  ||| || ||||| ||||||||||||||||||||||     ||||||||| |||||||| ||||| || |||||| ||||||| ||||    
T  47497751 cccaccaaatttgtatgggacccacataatttggtgggactcatgtga-----attttaaccaatcaaagaaaatatattgaaaaatgtgtgttagaatg 47497845  T
Q  157 tgtgttg 163  Q
    |||||||    
T  47497846 tgtgttg 47497852  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 18089750 - 18089806
Alignment:
Q  56 ggtcccaccaaattcatataggtcccacttaatttggtgggactcatgtgaatttta 112  Q
    |||||||||||||| |||| ||| |||| ||||||||| |||| |||||||||||||    
T  18089750 ggtcccaccaaatttatatgggttccacataatttggttggacccatgtgaatttta 18089806  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 2276322 - 2276381
Alignment:
Q  53 atgggtcccaccaaattcatataggtcccacttaatttggtgggactcatgtgaatttta 112  Q
    |||| |||||||||||| |||  || ||||| ||||||||||||| ||||||||||||||    
T  2276322 atggatcccaccaaatttataagggacccacataatttggtgggattcatgtgaatttta 2276381  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 12275775 - 12275842
Alignment:
Q  45 aaaatcatatgggtcccaccaaattcatataggtcccacttaatttggtgggactcatgtgaatttta 112  Q
    ||||||| ||||| ||||||||||| |||| || ||||| | |||||||||||| ||| |||||||||    
T  12275775 aaaatcacatgggacccaccaaatttatatgggacccacatgatttggtgggacccatatgaatttta 12275842  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 40134440 - 40134490
Alignment:
Q  62 accaaattcatataggtcccacttaatttggtgggactcatgtgaatttta 112  Q
    |||||||| |||| || ||||| |||||||||||||| |||||||||||||    
T  40134440 accaaatttatatgggacccacataatttggtgggacccatgtgaatttta 40134490  T

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Target: scaffold0137 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 8228 - 8284
Alignment:
Q  55 gggtcccaccaaattcatataggtcccacttaatttggtgggactcatgtgaatttta 112  Q
    |||||||||||||| ||| | |||||||| ||||||||||||| ||||||||||||||    
T  8228 gggtcccaccaaat-catgtgggtcccacataatttggtgggattcatgtgaatttta 8284  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 11650983 - 11650924
Alignment:
Q  53 atgggtcccaccaaattcatataggtcccacttaatttggtgggactcatgtgaatttta 112  Q
    ||||| ||||||||||| |||| || ||||| |||||||||||||  |||||||||||||    
T  11650983 atgggacccaccaaatttatatgggacccacataatttggtgggatccatgtgaatttta 11650924  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 3907699 - 3907758
Alignment:
Q  53 atgggtcccaccaaattcatataggtcccacttaatttggtgggactcatgtgaatttta 112  Q
    ||||| ||||||||||| |||| || ||||| | |||||||||||| |||||||||||||    
T  3907699 atgggacccaccaaatttatatgggacccacatgatttggtgggacccatgtgaatttta 3907758  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 4190153 - 4190094
Alignment:
Q  53 atgggtcccaccaaattcatataggtcccacttaatttggtgggactcatgtgaatttta 112  Q
    ||||| ||||||||||||| ||||| ||||| ||||||| |||||  |||||||||||||    
T  4190153 atgggacccaccaaattcacataggacccacgtaatttgttgggatccatgtgaatttta 4190094  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 33029520 - 33029598
Alignment:
Q  35 ttaatttgttaaaat-catatgggtcccaccaaattcatataggtcccacttaatttggtgggactcatgtgaatttta 112  Q
    |||||| |||||||| |||||  ||||||||||||| ||||  ||| ||  |||||||||||||||||||||| |||||    
T  33029520 ttaattagttaaaattcatataagtcccaccaaatttatatgagtcacatctaatttggtgggactcatgtgagtttta 33029598  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 27195304 - 27195356
Alignment:
Q  60 ccaccaaattcatataggtcccacttaatttggtgggactcatgtgaatttta 112  Q
    |||||||||| |||| ||||| || | |||| |||||||||||||||||||||    
T  27195304 ccaccaaatttatatgggtccgacatgattttgtgggactcatgtgaatttta 27195356  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 34437691 - 34437633
Alignment:
Q  53 atgggtcccaccaaattcatataggtcccacttaatttggtgggactcatgtgaatttta 112  Q
    ||||||||| ||||||| |||| |||||||| | |||||||||||| |||||||||||||    
T  34437691 atgggtccccccaaatt-atatgggtcccacatgatttggtgggacccatgtgaatttta 34437633  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 14345202 - 14345255
Alignment:
Q  59 cccaccaaattcatataggtcccacttaatttggtgggactcatgtgaatttta 112  Q
    ||||||||||| |||| || ||||| | ||||||||||| ||||||||||||||    
T  14345202 cccaccaaatttatatgggacccacatgatttggtgggattcatgtgaatttta 14345255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 13540274 - 13540226
Alignment:
Q  49 tcatatgggtcccaccaaattcatataggtcccacttaatttggtggga 97  Q
    |||||| |||||||||||||| ||||||||| ||| | |||||||||||    
T  13540274 tcatataggtcccaccaaatttatataggtctcacatgatttggtggga 13540226  T

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