View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17355_low_5 (Length: 475)
Name: NF17355_low_5
Description: NF17355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17355_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 12 - 457
Target Start/End: Original strand, 34563401 - 34563846
Alignment:
| Q |
12 |
atgaaagatggagtgcattgggtgctggtacacctatactgttaggaaacggcgatgctttgacgcaatattacgttccctatctatcttccattcaaat |
111 |
Q |
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| T |
34563401 |
atgaaagatggagtgcattgggtgcaggtacacctatactgttaggaaacggcgatgctttgacgcaatattacgttccctatctatcttccattcaaat |
34563500 |
T |
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| Q |
112 |
ctataccagtaagtctgttgcagcttctaggtaagccgaacacattactgctcgcttatttaccaaatatgtgtcagcaaaaaggtttgagttttcttta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34563501 |
ctataccagtaagtctgttgcagcttctaggtaagccgaacacattactgcttgcttatttaccaaatatgtgtcagcaaaaaggtttgagttttcttta |
34563600 |
T |
|
| Q |
212 |
atcccttcaaggaacaggagagaggataccgatgcagctgaatttgaatttgaatcctcgagtgaagatgatagtggaagcgatatcctatctagatcgg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34563601 |
atcccttcaaggaacaggagagaggataccgatgcagctgaatttgaatttgaatcctcgagtgaagatgatagtggaagcgatatcctatctagatcgg |
34563700 |
T |
|
| Q |
312 |
taagtaacaattctagcaaggcatgggatgctgtttccttggattcaagctccgatcaattgagtccgttgccaacaagaaatatgcttggttaccttta |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34563701 |
taagtaacaattctagcaaggcatgggatgctgtttccttggattcaagctccgatcaattgagtccgttgccaacaagaaatatgcttggttaccttta |
34563800 |
T |
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| Q |
412 |
cttacagtacaccgaaactttgtcgccttggttgagggttccgttt |
457 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34563801 |
cttacagtacaccgaaactttgtcgccttggttgagggttccgttt |
34563846 |
T |
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