View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17355_low_6 (Length: 440)
Name: NF17355_low_6
Description: NF17355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17355_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 9165898 - 9166192
Alignment:
| Q |
17 |
gtcaagctaattagttgt-ctacaaaatcagcacattgtacttagatgctataactcacgggttatccttatccaagctctactcaagtcttgcgagctt |
115 |
Q |
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| T |
9165898 |
gtcaagctaattagttgtgctacgaaatcagcacattgtacttagatgctataactcacgggttatccttatccaagctctactcaagtcttgcgagctt |
9165997 |
T |
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| Q |
116 |
atcggtctttcacttttaacagatttttgtgttagacaacttttaaacaatgtgttctcagattgtcctattagcagttttataatgtatatggtnnnnn |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9165998 |
atcggtctttcacttttaacagatttttgtgttagataacttttaaacaatatgttctcagattgtcctattagcagttttatgatgtatatggtaaaaa |
9166097 |
T |
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| Q |
216 |
nnttgttccctgcatgaaactaaccaaaagtaaattggtaaccttcaacatggattcataaatataaaacaaacaaggcaagatactcacccttt |
310 |
Q |
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| T |
9166098 |
aattgttccctgcatgaaactaaccaaaagtaaattggtaaccttcaacatggattcataaatataaaacaaacaaggcaagatactcacccttt |
9166192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 218 - 310
Target Start/End: Original strand, 9154691 - 9154787
Alignment:
| Q |
218 |
ttgttccctgcatgaaactaaccaaaagtaaattggtaaccttcaacatggattcat----aaatataaaacaaacaaggcaagatactcacccttt |
310 |
Q |
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|||||| || ||| |||||||| | ||||||| || ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
9154691 |
ttgttcactacataaaactaactagaagtaaactgataaccttcaacatggattcatgaaaaaatataaaacaaacaaggcaaaatactcacccttt |
9154787 |
T |
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