View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17355_low_8 (Length: 386)
Name: NF17355_low_8
Description: NF17355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17355_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 28591024 - 28591393
Alignment:
| Q |
1 |
aaattcaacaactgatttattaagatcatgttcatcaccgaaaaacaccgaagtagagttaagatcatatagtaaaccagaattccgattcttctcaaca |
100 |
Q |
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| T |
28591024 |
aaattcaacaactgatttattaagatcatgtttatcaccgaaaaacaccgaagtagagttaagatcatatagtaaaccagaattccgattcttctcaaca |
28591123 |
T |
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| Q |
101 |
aaatctcccatcttcgccgaatccatgaaactcatcaaacctnnnnnnnnnntgattaaggagtgtttggttaaaaggaagaagttgaaaaatggcgtaa |
200 |
Q |
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| T |
28591124 |
aaatctcccatcttcgccgaatccatgaaactcatcaaacctaaaaaaaaaatgattaaggagtgtttggttaaaaggaagaagttgaaaaatggcgtta |
28591223 |
T |
|
| Q |
201 |
gagttaagttaccattggcattgacatagaagttatcgtaatgagagtcggtgtggaattgaggaaaatgtgagttaagcagttcagttggagacaaagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28591224 |
gagttaagttaccattggcattgacatagaagttatcgtaatgagagtcggtgtggaattgaggaaaatgtgagttaagcagttcagttggagacaaagg |
28591323 |
T |
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| Q |
301 |
aaacgtaagcaagttagtagaattagaagaagccattttcaaatttaacggtttttccgcgcaaagaaac |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28591324 |
aaacgtaagcaagttagtagaattagaagaagccattttcaaatttaacggtttttccgcgcaaagaaac |
28591393 |
T |
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