View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17356_high_12 (Length: 252)
Name: NF17356_high_12
Description: NF17356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17356_high_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 5141721 - 5141923
Alignment:
| Q |
9 |
tccaagaatataaccaaagtaggaactctgatgttaaggctttttgagagcatctatgacattggaagagtcagattcaactgtgagatttaagaataac |
108 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5141721 |
tccaacaatagaaccaaagtaggaactctgatgttaaggctt-----------ctatgacattggaagagtcagattcaactgtgagatttaagaataac |
5141809 |
T |
|
| Q |
109 |
atatccttcgcaaattctagtgtggtgaggcaaaccacact-gtttcacccaatcacactctctaaaaagatgatcaattgtttcattttgttggtcaca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5141810 |
atatccttcgcaaattctagtgtggtgaggcaaaccacactattttcacccaatcacactctctaaaaagatgatcaattgtttcattttgttggtcaca |
5141909 |
T |
|
| Q |
208 |
taaacagcacaagg |
221 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5141910 |
taaacagcacaagg |
5141923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 5141965 - 5141997
Alignment:
| Q |
220 |
ggaagatgactatgcagatttctccataacaga |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
5141965 |
ggaagatgactatgcagatttctccataacaga |
5141997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 128
Target Start/End: Complemental strand, 29161113 - 29161012
Alignment:
| Q |
27 |
gtaggaactctgatgttaaggctttttgagagcatctatgacattggaagagtcagattcaactgtgagatttaagaataacatatccttcgcaaattct |
126 |
Q |
| |
|
|||||| |||||||||| ||||||||| ||||||||||||||| | ||||||||||||||| ||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
29161113 |
gtaggatctctgatgttgaggcttttttagagcatctatgacaatagaagagtcagattcagatgtgagatttaggaataacatatctttcgcaaattct |
29161014 |
T |
|
| Q |
127 |
ag |
128 |
Q |
| |
|
|| |
|
|
| T |
29161013 |
ag |
29161012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University