View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17356_high_3 (Length: 436)
Name: NF17356_high_3
Description: NF17356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17356_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 38052138 - 38052002
Alignment:
| Q |
1 |
ttagggcaattctggagcaatataatagaagtttagttttagttttgtaatatgaattgattttttcatcgagaagactcttctccatctacaacggaca |
100 |
Q |
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| T |
38052138 |
ttagggcaattctagagcaatataatagaagtttagttttagttttgtaatatgaattgatttcttcatcgagaagactcttctccatctacaacgaaca |
38052039 |
T |
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| Q |
101 |
ataagaagatacatacttacatacgtacatacatatt |
137 |
Q |
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| T |
38052038 |
ataagaagatacatacttacatacgtacatacatatt |
38052002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 144 - 358
Target Start/End: Complemental strand, 38051897 - 38051672
Alignment:
| Q |
144 |
caaggcatagaataaacaacagatagagtgaaaggggcatgataagagaggttgttggtgccaacagtgctgttaagtagagtgtaaagagtttggatga |
243 |
Q |
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| T |
38051897 |
caaggcatagaataaacaacagatagagtgaaaagg-catcataagagaggttg---gtgccaacagtgctgttaagtagagggtaaagagtttggatga |
38051802 |
T |
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| Q |
244 |
gaaggtagctgc-------------cacacattgaatcatattgatgcctatca-cat-atatagcagcgtctcatcttgttgttttcggtattgttaca |
328 |
Q |
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| T |
38051801 |
gaaggtagctgcaacatagaagcagcacacattgaatcatattgatgcctatcagtatcacatagcagcgtctgatcttgttgttttcggtattgttaca |
38051702 |
T |
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| Q |
329 |
acacaatgtcagttctttcttcatgataag |
358 |
Q |
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| T |
38051701 |
acacaaggtcagttctttcttcatgataag |
38051672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 355 - 418
Target Start/End: Complemental strand, 38051523 - 38051462
Alignment:
| Q |
355 |
taagtaatgaatagccaagggaattaaatcaatactatgaatggtgccttaatttagttgcaat |
418 |
Q |
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| T |
38051523 |
taagtaatgaattg--aagggaattaaatcaatactatgaatggtgccttaatttagttgcaat |
38051462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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