View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17356_high_9 (Length: 319)
Name: NF17356_high_9
Description: NF17356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17356_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 35905318 - 35905010
Alignment:
| Q |
1 |
gaaaattatattcataacgagagaatatgaaacgtcaattacgctaaaagagtatataagatttatatagccaatgagaataacaactaactagtgtaat |
100 |
Q |
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| T |
35905318 |
gaaaattatattgataacgagagaatatgaaacgtgaattacgctaaaagagtatataagatttatatagccaatgagaataacaactaactagtgtaat |
35905219 |
T |
|
| Q |
101 |
taactaattttatatctgataccaggttcatacacaaacaccacatcaagttggttgcctctctatggaaattctcacacaaccggaacgaaatcaacag |
200 |
Q |
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| T |
35905218 |
taactaattttatatctgataccaggttcatacacaaacaccacatcaagttggttgcctctctatggaaattctcacacaaccggaacgaaatcaacag |
35905119 |
T |
|
| Q |
201 |
gatcagggaagagtactatgggcagtggtgcaaatttagccatggctcaaggactgtgtcgatatttctctttacaagagatgaagcaagcaaccaagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905118 |
gatcagggaagagtactatgggcagtggtgcaaatttagccatggctcaaggactgtgtcgatatttctctttacaagagatgaagcaagcaaccaagaa |
35905019 |
T |
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| Q |
301 |
ttttgatga |
309 |
Q |
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||||||||| |
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| T |
35905018 |
ttttgatga |
35905010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 309
Target Start/End: Original strand, 47624163 - 47624233
Alignment:
| Q |
239 |
gccatggctcaaggactgtgtcgatatttctctttacaagagatgaagcaagcaaccaagaattttgatga |
309 |
Q |
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| T |
47624163 |
gccatgacccaaggtctatgtcgctatttttcgttacaagagataaagcaagcaaccaacagttttgatga |
47624233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 13868806 - 13868847
Alignment:
| Q |
66 |
tatagccaatgagaataacaactaactagtgtaattaactaa |
107 |
Q |
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| T |
13868806 |
tatagccaatgagaataacgactaactaatgtaactaactaa |
13868847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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