View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17356_low_1 (Length: 628)

Name: NF17356_low_1
Description: NF17356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17356_low_1
NF17356_low_1
[»] chr1 (17 HSPs)
chr1 (24-437)||(9219243-9219655)
chr1 (485-628)||(9219052-9219195)
chr1 (489-628)||(9162143-9162282)
chr1 (485-628)||(9156231-9156374)
chr1 (485-628)||(9170969-9171112)
chr1 (485-628)||(9178951-9179094)
chr1 (485-628)||(9200536-9200679)
chr1 (15-136)||(9162578-9162699)
chr1 (485-626)||(9118166-9118307)
chr1 (27-119)||(9156784-9156876)
chr1 (27-119)||(9171392-9171484)
chr1 (27-119)||(9179374-9179466)
chr1 (27-134)||(9201067-9201174)
chr1 (312-437)||(9162334-9162459)
chr1 (594-628)||(1816318-1816352)
chr1 (362-432)||(9118043-9118113)
chr1 (373-433)||(9200731-9200791)


Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 24 - 437
Target Start/End: Complemental strand, 9219655 - 9219243
Alignment:
Q  24 tacgaatgtttttgtcctgatggacactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaagtcac 123  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9219655 tacgaatgtttttgtcctaatggacaatctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaagtcac 9219556  T
Q  124 taagcatagcccacatatattgtcacaagttttagttaggattgaatcagttgcaaatactcgagtttgataaccgactctagaacaatatttagttaca 223  Q
    |||| ||| |||||||||||| |||||| || |||||| |||||||||||| || ||||||||||||||||||| |||||||||||||| ||||||||||    
T  9219555 taagaataacccacatatattttcacaatttctagttaagattgaatcagt-gcgaatactcgagtttgataactgactctagaacaatttttagttaca 9219457  T
Q  224 tttacctaagtttaagtcgaactcaagattactaaaagggccgaagggttaagaccaggnnnnnnntatgattaaagtattcagcatgcatgttagctat 323  Q
    |||| |||| ||||||| |||||| ||| ||||||||||| ||||||||||||||||||       ||||||||| ||||||||||||||||||||||||    
T  9219456 tttatctaactttaagttgaactccagactactaaaagggtcgaagggttaagaccaggaaaaaaatatgattaaggtattcagcatgcatgttagctat 9219357  T
Q  324 tgatattaatttataaaacaattcattaacttgctacaacacaattgaaatgcaggatcaagtgctggactaatagtcctatttgtggcggtttcatctc 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9219356 tgatattaatttataaaacaattcattaacttgctacaacacaattgaaatgcaggatcaagtgctggactaatagtcctatttgtggcggtttcatctc 9219257  T
Q  424 tatacttgacgtac 437  Q
    ||||||||||||||    
T  9219256 tatacttgacgtac 9219243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 485 - 628
Target Start/End: Complemental strand, 9219195 - 9219052
Alignment:
Q  485 tggtggttctattttgctacaacaactatcaacaagagaagacacttcgcaatcagctcagatattcacggaagaggaacttaagaaagccaccaaaaac 584  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9219195 tggtggttctattttgctacaacaactatcaacaagagaagacacttcgcaatcagctcaaatattcacggaagaggaacttaagaaagccaccaaaaac 9219096  T
Q  585 tacgacgaaagcttaatcatcggtagaggaggttttggtacagt 628  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9219095 tacgacgaaagcttaatcatcggtagaggaggttttggtacagt 9219052  T

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Target: chr1; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 489 - 628
Target Start/End: Complemental strand, 9162282 - 9162143
Alignment:
Q  489 ggttctattttgctacaacaactatcaacaagagaagacacttcgcaatcagctcagatattcacggaagaggaacttaagaaagccaccaaaaactacg 588  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||    
T  9162282 ggttctatattgctacaacagctatcaacaagagaagacacttcgcaatcagctcaaatattcacagaagaggaactaaagaaagccaccaaaaactacg 9162183  T
Q  589 acgaaagcttaatcatcggtagaggaggttttggtacagt 628  Q
    | || |||||||||||||| ||||||||||||||||||||    
T  9162182 atgatagcttaatcatcggcagaggaggttttggtacagt 9162143  T

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Target: chr1; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 485 - 628
Target Start/End: Complemental strand, 9156374 - 9156231
Alignment:
Q  485 tggtggttctattttgctacaacaactatcaacaagagaagacacttcgcaatcagctcagatattcacggaagaggaacttaagaaagccaccaaaaac 584  Q
    ||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||||    
T  9156374 tggtggttccattttgctacaacaactatctacaagagaagacacctcgcaatcagctgaaatattcactgaagaggaacttaagaaagccaccaaaaac 9156275  T
Q  585 tacgacgaaagcttaatcatcggtagaggaggttttggtacagt 628  Q
    ||||| |||| ||||||||| || ||||||||||||||||||||    
T  9156274 tacgatgaaaacttaatcattggcagaggaggttttggtacagt 9156231  T

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Target: chr1; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 485 - 628
Target Start/End: Complemental strand, 9171112 - 9170969
Alignment:
Q  485 tggtggttctattttgctacaacaactatcaacaagagaagacacttcgcaatcagctcagatattcacggaagaggaacttaagaaagccaccaaaaac 584  Q
    ||||||||| ||||||||||||||||| || ||||| ||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  9171112 tggtggttccattttgctacaacaactgtctacaagtgaagacacttcgcaagcagctcaaatattcacagaagaggaacttaagaaagccaccaaaaac 9171013  T
Q  585 tacgacgaaagcttaatcatcggtagaggaggttttggtacagt 628  Q
    ||||| |||||||||||||| || ||||||||||||||||||||    
T  9171012 tacgatgaaagcttaatcattggcagaggaggttttggtacagt 9170969  T

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Target: chr1; HSP #6
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 485 - 628
Target Start/End: Complemental strand, 9179094 - 9178951
Alignment:
Q  485 tggtggttctattttgctacaacaactatcaacaagagaagacacttcgcaatcagctcagatattcacggaagaggaacttaagaaagccaccaaaaac 584  Q
    ||||||||| ||||||||||||||||| || ||||| ||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  9179094 tggtggttccattttgctacaacaactgtctacaagtgaagacacttcgcaagcagctcaaatattcacagaagaggaacttaagaaagccaccaaaaac 9178995  T
Q  585 tacgacgaaagcttaatcatcggtagaggaggttttggtacagt 628  Q
    ||||| |||||||||||||| || ||||||||||||||||||||    
T  9178994 tacgatgaaagcttaatcattggcagaggaggttttggtacagt 9178951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 485 - 628
Target Start/End: Complemental strand, 9200679 - 9200536
Alignment:
Q  485 tggtggttctattttgctacaacaactatcaacaagagaagacacttcgcaatcagctcagatattcacggaagaggaacttaagaaagccaccaaaaac 584  Q
    ||||||||| |||||| |||| |||||||| ||||||||||||||||| ||| |||| || |||||||| |||||||||||||||||||||||||||||     
T  9200679 tggtggttccattttggtacagcaactatctacaagagaagacacttctcaagcagcacaaatattcacagaagaggaacttaagaaagccaccaaaaaa 9200580  T
Q  585 tacgacgaaagcttaatcatcggtagaggaggttttggtacagt 628  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9200579 tacgacgaaagcttaatcatcggtagaggaggttttggtacagt 9200536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 9162699 - 9162578
Alignment:
Q  15 gatggatcatacgaatgtttttgtcctgatggacactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattg 114  Q
    ||||||| ||| |||||||| |||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||    
T  9162699 gatggattatatgaatgtttctgtcctgatggacaatctggaaatggaacacttgaaggaggttgtcatagacgagatattgttatcaaggttgccattg 9162600  T
Q  115 gtaagtcactaagcatagccca 136  Q
    ||| |||||||| |||||||||    
T  9162599 gtatgtcactaaacatagccca 9162578  T

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Target: chr1; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 485 - 626
Target Start/End: Original strand, 9118166 - 9118307
Alignment:
Q  485 tggtggttctattttgctacaacaactatcaacaagagaagacacttcgcaatcagctcagatattcacggaagaggaacttaagaaagccaccaaaaac 584  Q
    ||||||||  |||||||||||| |||| |  |||||||||||||| || |||||||||||||||||||| ||| |||||||||| ||||| ||||| | |    
T  9118166 tggtggtttcattttgctacaaaaactctttacaagagaagacacgtctcaatcagctcagatattcacagaaaaggaacttaaaaaagctaccaacagc 9118265  T
Q  585 tacgacgaaagcttaatcatcggtagaggaggttttggtaca 626  Q
    |||||||||||||||||||| || ||||||||||| ||||||    
T  9118266 tacgacgaaagcttaatcattggaagaggaggtttcggtaca 9118307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 9156876 - 9156784
Alignment:
Q  27 gaatgtttttgtcctgatggacactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaag 119  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |  | |||||||||||||||||||||    
T  9156876 gaatgtttctgtcctgatggacactctggaaatggaacattggaaggagggtgtcatagacgagaggtcatcaccaaggttgccattggtaag 9156784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 9171484 - 9171392
Alignment:
Q  27 gaatgtttttgtcctgatggacactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaag 119  Q
    |||||||| |||||||||||||| |||||||||||||||  ||||||||| ||||||||||||||| || |||||||||||||||||||||||    
T  9171484 gaatgtttctgtcctgatggacaatctggaaatggaacaaaggaaggagggtgtcatagacgagatgttattaccaaggttgccattggtaag 9171392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 9179466 - 9179374
Alignment:
Q  27 gaatgtttttgtcctgatggacactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaag 119  Q
    |||||||| |||||||||||||| |||||||||||||||  ||||||||| ||||||||||||||| || |||||||||||||||||||||||    
T  9179466 gaatgtttctgtcctgatggacaatctggaaatggaacaaaggaaggagggtgtcatagacgagatgttattaccaaggttgccattggtaag 9179374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 27 - 134
Target Start/End: Complemental strand, 9201174 - 9201067
Alignment:
Q  27 gaatgtttttgtcctgatggacactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaagtcactaa 126  Q
    ||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| || |||| || ||||||||||||| |||||||||   ||||    
T  9201174 gaatgtttttgtcctgatggacaatctggaaatggaacgttggcaggaggttgtcataaacaagatgttattaccaaggttgcaattggtaagaacctaa 9201075  T
Q  127 gcatagcc 134  Q
    ||||||||    
T  9201074 gcatagcc 9201067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 312 - 437
Target Start/End: Complemental strand, 9162459 - 9162334
Alignment:
Q  312 catgttagctattgatattaatttataaaacaattcattaacttgctacaacacaattgaaatgcaggatcaagtgctggactaatagtcctatttgtgg 411  Q
    |||||||||||| ||||||| |||||| ||||||| || || |  || ||| ||| || |||||||||| ||||||||||| | ||  | ||||||||||    
T  9162459 catgttagctatcgatattattttatagaacaatttatgaattgacttcaatacatttcaaatgcaggagcaagtgctggaatcattattctatttgtgg 9162360  T
Q  412 cggtttcatctctatacttgacgtac 437  Q
    || |||||  ||||||||||||||||    
T  9162359 cgatttcagttctatacttgacgtac 9162334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 594 - 628
Target Start/End: Complemental strand, 1816352 - 1816318
Alignment:
Q  594 agcttaatcatcggtagaggaggttttggtacagt 628  Q
    ||||||||||| |||||||||||||||||||||||    
T  1816352 agcttaatcataggtagaggaggttttggtacagt 1816318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 362 - 432
Target Start/End: Original strand, 9118043 - 9118113
Alignment:
Q  362 acacaattgaaatgcaggatcaagtgctggactaatagtcctatttgtggcggtttcatctctatacttga 432  Q
    ||||| || |||||||||||||||||||||| |  |  | |||||||||| | ||||||||||||||||||    
T  9118043 acacatttcaaatgcaggatcaagtgctggaatcgttattctatttgtggggatttcatctctatacttga 9118113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 373 - 433
Target Start/End: Complemental strand, 9200791 - 9200731
Alignment:
Q  373 atgcaggatcaagtgctggactaatagtcctatttgtggcggtttcatctctatacttgac 433  Q
    |||||||| ||||||||||| | || || |||||||| ||| |||| ||||||||||||||    
T  9200791 atgcaggagcaagtgctggaatcattgttctatttgtcgcgatttcttctctatacttgac 9200731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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