View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17356_low_2 (Length: 509)
Name: NF17356_low_2
Description: NF17356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17356_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 4 - 497
Target Start/End: Complemental strand, 35906174 - 35905681
Alignment:
| Q |
4 |
gattcaccttcgttggtcggttatgatgatcaaaccatggatgctaaaaatttgcattttcaaacaatggttagattaaatattggtgggcaatttatat |
103 |
Q |
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| T |
35906174 |
gattcaccttcattggtcggttatgatgatcaaaccatggatgctaaaaatttgcattttcaaacaatgtttagattaaatgttggtgggcaatttatat |
35906075 |
T |
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| Q |
104 |
ctccagttcaagattccggtttgagtcgaacatggtacgatgatacgccttatctttacggtgcttccaccggtattacaaatcaagctgctaaggatgt |
203 |
Q |
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| T |
35906074 |
ctccagttcaagattccggtttgagtcgaacatggtacgatgatacgccttatctttacggtgcttccactggtattacaaatcaagctgctaaggatgt |
35905975 |
T |
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| Q |
204 |
taaaattgattatcaaactatgcctcaatacattgctcctcatgatgtttattcaacatcaagatcaatgggaaataataaagatgtcaacatgggatac |
303 |
Q |
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| T |
35905974 |
taaaattgattatcaaactatgcctcaatacattgctcctcatgatgtttattcaacgtcaagatcaatgggaaataataaagatgtcaacatgggatac |
35905875 |
T |
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| Q |
304 |
aatctcacatggatgtttcaagttgatccgaattcaatgtacttaaccaggttgcatttttgtgattacttttattctaaagttaatgaaattgttttca |
403 |
Q |
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| T |
35905874 |
aatctcacatggatgtttcaagttgatccgaattcaatgtacttaaccaggttgcatttttgtgattacttttattctaaagttaatgagattgttttca |
35905775 |
T |
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| Q |
404 |
atgtctttgtcaacaatcaaacggcgcagactggggcggatgttattggttggacaggcggtaaaggagtgcctacttataaggattatgtgat |
497 |
Q |
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| T |
35905774 |
atgtctttgtcaacaatcaaacggcgcagactggggcggatgttattggttggacaggcagtaaaggagtgcctacttataaggattatgtgat |
35905681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 214 - 470
Target Start/End: Original strand, 47623464 - 47623720
Alignment:
| Q |
214 |
tatcaaactatgcctcaatacattgctcctcatgatgtttattcaacatcaagatcaatgggaaataataaagatgtcaacatgggatacaatctcacat |
313 |
Q |
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| T |
47623464 |
tatcagactatgccaaagtacattgcacctcctactgtctactccacatcaagatcaatgggtaccgataaggacgtcaacatgggatacaacctcacgt |
47623563 |
T |
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| Q |
314 |
ggatgtttcaagttgatccgaattcaatgtacttaaccaggttgcatttttgtgattacttttattctaaagttaatgaaattgttttcaatgtctttgt |
413 |
Q |
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| T |
47623564 |
gggttttccaagttgatccaaattccatgtacctcgtgaggttgcatttctgtgatttctattattccaaggtcaatgagattgttttcaatatatttct |
47623663 |
T |
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| Q |
414 |
caacaatcaaacggcgcagactggggcggatgttattggttggacaggcggtaaagg |
470 |
Q |
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| T |
47623664 |
caataacaatacggcacaggctcaagctgatattattgggtggacaggaggtaaagg |
47623720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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