View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17356_low_4 (Length: 411)
Name: NF17356_low_4
Description: NF17356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17356_low_4 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 40888405 - 40888014
Alignment:
| Q |
1 |
gaaaacaaataacaagaagcaaacaccgtagtaagaaaataaccacaagtgttattttggaagtaaaggagtaaatactcaaattagtccttagaattgt |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40888405 |
gaaaacaaataacaagaagcaaacaccatagtaagaaaataaccacaagtgttattttggaagtaaaggagtaaatactcaaattagtccttagaattgt |
40888306 |
T |
|
| Q |
101 |
aggactgtatcaatctagtccctcacattatcgatattccagatcaacatggtacctcgaatttcaaggttttaatcaaatgcatccttctgttggaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40888305 |
aggactgtatcaatctagtccctcacattatcgatattccagatcaacatggtacctcgaatttcaaggttttaatcaaatgcatccttctgttggaatt |
40888206 |
T |
|
| Q |
201 |
tgaagggactaagaatgaaattaagttggtcataatgtggnnnnnnnttgaaagtaagtgaataatgccagtgatgcattttaataccacaatcaaacag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40888205 |
tgaagggactaagaatgaaattaagttggtcataatgtggaaaaaaattgaaagtaagtgaataatgccagtgatgcattttaataccacaatcaaacag |
40888106 |
T |
|
| Q |
301 |
atggacaaatttattaacattttgcaattttaagtatcattgtggaatcttgaatattgataatacggagtaatatattgatacaaccttac |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40888105 |
atggacaaatttattaacattttgcaattttaagtatcattgtggaatcttgaatattgataatacggagtactatattgatacaaccttac |
40888014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 44139635 - 44139244
Alignment:
| Q |
1 |
gaaaacaaataacaagaagcaaacaccgtagtaagaaaataaccacaagtgttattttggaagtaaaggagtaaatactcaaattagtccttagaattgt |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44139635 |
gaaaacaaataacaagaagcaaacaccatagtaagaaaataaccacaagtgttattatggaagtaaaggagtaaatactcaaattagtccttagaattgt |
44139536 |
T |
|
| Q |
101 |
aggactgtatcaatctagtccctcacattatcgatattccagatcaacatggtacctcgaatttcaaggttttaatcaaatgcatccttctgttggaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44139535 |
aggactgtatcaatctagtccctcacattatcgatattccagatcaacatggtacctcgaatttcaaggttttaatcaaatgcatccttctgttggaatt |
44139436 |
T |
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| Q |
201 |
tgaagggactaagaatgaaattaagttggtcataatgtggnnnnnnnttgaaagtaagtgaataatgccagtgatgcattttaataccacaatcaaacag |
300 |
Q |
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| T |
44139435 |
tgaagggact-ggaatgaaattaagttggtcataatgtggaaaaaaattgaaagtaagtgaataatgccagtgatgcattttaataccacaatcaaacag |
44139337 |
T |
|
| Q |
301 |
atggacaaattt-attaacattttgcaattttaagtatcattgtggaatcttgaatattgataatacggagtaatatattgatacaaccttac |
392 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
44139336 |
atggacaaatttgattaacattttgcaatttcaagtatcattgtggaatcttgaatattgataatatggagtactatattgatacaaccttac |
44139244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 47892582 - 47892652
Alignment:
| Q |
71 |
gtaaatactcaaattagtccttagaattgtaggactgtatcaatctagtccctcacattatcgatattcca |
141 |
Q |
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|||||||||||| || |||||| |||||||||| |||| ||||||| ||||||||||||||||||||||| |
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| T |
47892582 |
gtaaatactcaatttggtccttgaaattgtaggattgtaccaatctaatccctcacattatcgatattcca |
47892652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 51547808 - 51547876
Alignment:
| Q |
69 |
gagtaaatactcaaattagtccttagaattgtaggactgtatcaatctagtccctcacattatcgatat |
137 |
Q |
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||||||||||||||| | |||||| |||| ||| | ||| ||||| |||||||||||||||||||||| |
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| T |
51547808 |
gagtaaatactcaaagtggtccttgaaattatagtattgtgtcaatgtagtccctcacattatcgatat |
51547876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 27970139 - 27970073
Alignment:
| Q |
73 |
aaatactcaaattagtccttagaattgtaggactgtatcaatctagtccctcacattatcgatattc |
139 |
Q |
| |
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|||| |||||||| ||| || |||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
27970139 |
aaatgctcaaattggtcactaaaattgtaggattgtatcaatctagtccctcacattattgatattc |
27970073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 12241351 - 12241394
Alignment:
| Q |
95 |
aattgtaggactgtatcaatctagtccctcacattatcgatatt |
138 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
12241351 |
aattgtagggctgtatcaatgtagtccctcacattatcgatatt |
12241394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 33227 - 33181
Alignment:
| Q |
95 |
aattgtaggactgtatcaatctagtccctcacattatcgatattcca |
141 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
33227 |
aattgtaggactgtataaatctagtctttcacattatcgatattcca |
33181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 5361094 - 5361168
Alignment:
| Q |
64 |
taaaggagtaaatactcaaattagtccttagaattgtaggactgtatcaatctagtccctcacattatcgatatt |
138 |
Q |
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|||| ||||| ||||||||||| ||| | | ||||||| || |||||||||| ||||||||| |||||||||||| |
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| T |
5361094 |
taaatgagtacatactcaaattggtcatcaaaattgtaagattgtatcaatccagtccctcatattatcgatatt |
5361168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 329
Target Start/End: Complemental strand, 41734584 - 41734510
Alignment:
| Q |
255 |
taagtgaataatgccagtgatgcattttaataccacaatcaaacagatggacaaatttattaacattttgcaatt |
329 |
Q |
| |
|
||||||||||||| || ||||||||| ||| || | ||||||||| ||||||| ||||||||||||||||||| |
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| T |
41734584 |
taagtgaataatgttagaaatgcattttgataacaaactcaaacagaaggacaaacttattaacattttgcaatt |
41734510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 17775894 - 17775940
Alignment:
| Q |
95 |
aattgtaggactgtatcaatctagtccctcacattatcgatattcca |
141 |
Q |
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||||||||||||||||| |||||| |||||||||||| |||| |||| |
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| T |
17775894 |
aattgtaggactgtatcgatctagcccctcacattattgatactcca |
17775940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 2371738 - 2371781
Alignment:
| Q |
98 |
tgtaggactgtatcaatctagtccctcacattatcgatattcca |
141 |
Q |
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|||||||||||||||||||||||||| |||| || ||||||||| |
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| T |
2371738 |
tgtaggactgtatcaatctagtccctaacataatggatattcca |
2371781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 21873761 - 21873712
Alignment:
| Q |
82 |
aattagtccttagaattgtaggactgtatcaatctagtccctcacattat |
131 |
Q |
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||||||||||| ||||||||| ||||||||||||||| |||||||||| |
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| T |
21873761 |
aattagtccttgaaattgtaggtttgtatcaatctagtctctcacattat |
21873712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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