View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17356_low_5 (Length: 408)
Name: NF17356_low_5
Description: NF17356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17356_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 12 - 390
Target Start/End: Original strand, 35906147 - 35906525
Alignment:
| Q |
12 |
catcatcaccgaccaacgaaggtgaatcaaagaacaaatccggcatttgaataagttgaataccattaataaaagcaaaagcaccactgtgtttatcaga |
111 |
Q |
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| T |
35906147 |
catcataaccgaccaatgaaggtgaatctaacaacaaatccggcatttgaataagttgaataccattaataaaagcaaaagcaccattgtgtttatcaga |
35906246 |
T |
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| Q |
112 |
aggcttaaaagtaagattaagaacatttgaattcaaaggtgcaagtgaatattctctatcaagataagcttgagataaggcttgacatgtaatcgacgag |
211 |
Q |
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| T |
35906247 |
aggcttaaaagtaagattaagaacatttgaattcaaaggtgcaagtgaatattctctatcaagataagcttgagataaggcttgacatgtaatcgatgag |
35906346 |
T |
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| Q |
212 |
ctaaaattgttgagaagtgtaacaccatttgccgttacagaaaaatacgaatccgatgggttcaaattgttgtaaacagaaggataaaaatgtagtctta |
311 |
Q |
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| T |
35906347 |
ctaaaattgttgagaagtgcaacaccatttgccgttacagaaaaatacgaatccgatgggttcaaattgttgtaaacagaaggataaaaatgtagtctta |
35906446 |
T |
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| Q |
312 |
accaataacgtttatttggcagaatagggaatttgtaggttgattctgatgtgaaaacacgcgctgacatgtatggaat |
390 |
Q |
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| T |
35906447 |
accaataacgtttatttggtagaatagggaatttgtaggttgattctgatgtgaaaacacgcgctgacatgtatggaat |
35906525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 389
Target Start/End: Complemental strand, 47623252 - 47622907
Alignment:
| Q |
44 |
aacaaatccggcatttgaataagttgaataccattaataaaagcaaaagcaccactgtgtttatcagaaggcttaaaagtaagattaagaacatttgaat |
143 |
Q |
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| T |
47623252 |
aacaactcaggcatttggatcaattgaattccattgatgaaagcaaaagtcccattttgcttgtcagaaggtttaaatgtaagagtcaaagtatctgaat |
47623153 |
T |
|
| Q |
144 |
tcaaaggtgcaagtgaatattctctatcaagataagcttgagataaggcttgacatgtaatcgacgagctaaaattgttgagaagtgtaacaccatttgc |
243 |
Q |
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| T |
47623152 |
tcaaaggagcaagagaatactctctgtcaatgtaagcttgtgagagggcctgacaagtgatagaagcgctgaaattgctgaggagggtaatcccatttgc |
47623053 |
T |
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| Q |
244 |
cgttacagaaaaatacgaatccgatgggttcaaattgttgtaaacagaaggataaaaatgtagtcttaaccaataacgtttatttggcagaatagggaat |
343 |
Q |
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| T |
47623052 |
agccacagagaaatatgaatcggaggggttgaaagttccataaagggatggataaaagtggagcctgagccaataacgtttatcaggctgaacattaaat |
47622953 |
T |
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| Q |
344 |
ttgtaggttgattctgatgtgaaaacacgcgctgacatgtatggaa |
389 |
Q |
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| T |
47622952 |
ttgtatgttgtttctgatgtgaaaattctagctgacatgtatggaa |
47622907 |
T |
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