View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17356_low_6 (Length: 374)
Name: NF17356_low_6
Description: NF17356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17356_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 10 - 359
Target Start/End: Complemental strand, 47835752 - 47835403
Alignment:
| Q |
10 |
aagaatataaaagaggtccaatccattgttacggaacaccgtagatattaagaaacactatgtatatgatataaatgaatgtcaatctatattcttccaa |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47835752 |
aagaacataaaagaggtccaatccattgttacggaacaccgtagatattaagaaacactatgtatatgatataaatgaatgtcaatctatattcttccaa |
47835653 |
T |
|
| Q |
110 |
aaggtgtgtccgatgggatggaggatgcttgggaataaagaatcctgaggctttcaatatagctttactggcaatgtggagatggaggatgcttgttgat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47835652 |
aaggtgtgtccgatgggatggaggatgcttgggaataaagaatcctgaggctttcaatatagctttactggcaatgtggagatggaggatgcttgttgat |
47835553 |
T |
|
| Q |
210 |
acagatagcatacggcataactttctgaaatacaggtatgggaatcttagtgaagctatcttgaatggagaagatgaagctgcagacaataaacaatcgc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47835552 |
acagatagcatacggcataactttctgaaatacaggtatgggaatcttagtgaagctatcatgaatggagaagatgaagctgcagacaataaacaatcgc |
47835453 |
T |
|
| Q |
310 |
tttggtggagttgggaacaacattaaacaatggagcaaactagtttgttg |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47835452 |
tttggtggagttgggaacaacattaaacaatggagcaaactagtttgttg |
47835403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University