View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17356_low_8 (Length: 363)
Name: NF17356_low_8
Description: NF17356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17356_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 35354525 - 35354182
Alignment:
| Q |
9 |
aatatttgatcatccctgcaaatgccacacagtcaaaatcttaacatagattaatgtttaatagaaagagtattatttaaagggnnnnnnnnnnnnnn-- |
106 |
Q |
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| T |
35354525 |
aatatttgatcatccctgcaaatgccaaacagtcaaaatcttaacatagattaatgtttaatagaaaaagtattatttaaagggaaaataaaaaaaaaaa |
35354426 |
T |
|
| Q |
107 |
---ttggaactaaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaat |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354425 |
aaattggaactaaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaat |
35354326 |
T |
|
| Q |
204 |
agaaatccaaatctggttgtgtagcattctgatcaacataaaaggaaatatgacatggtacactggatccctttcaccccatatgaaagagtacatgcta |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354325 |
agaaatccaaatctggttgtgtagcattctgatcaacataaaaggaaatatgacatggtacactggatccctttcaccccatatgaaagagtacatgcta |
35354226 |
T |
|
| Q |
304 |
tgagcaatccacgggcttagaatcatgaacctaatttatgtcca |
347 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35354225 |
tgagcaatccacgggcttagaatcatgaacttaatttatgtcca |
35354182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 107 - 339
Target Start/End: Complemental strand, 35369456 - 35369224
Alignment:
| Q |
107 |
ttggaactaaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaataga |
206 |
Q |
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|||||| ||||||||||||||||||||| |||||||| |||||||||| |||||||||||| |||||||| ||| ||||||||| || ||||| ||||| |
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| T |
35369456 |
ttggaattaaccaattggtttctctatcgacttgttcaaattcaaggcttttgtcaacaattttgcttttgcctctagcagtttcatatcgtgagataga |
35369357 |
T |
|
| Q |
207 |
aatccaaatctggttgtgtagcattctgatcaacataaaaggaaatatgacatggtacactggatccctttcaccccatatgaaagagtacatgctatga |
306 |
Q |
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|||||||||||| |||||||||||||||| ||| ||||||||| |||||| || | | ||| ||||||||| |||||||||||||||| ||||| || |
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| T |
35369356 |
aatccaaatctgattgtgtagcattctgaccaatataaaaggacatatgagatattgtattgggtccctttcaacccatatgaaagagtatatgctgtgg |
35369257 |
T |
|
| Q |
307 |
gcaatccacgggcttagaatcatgaacctaatt |
339 |
Q |
| |
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||||||| ||| ||||||||| |||| ||||| |
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| T |
35369256 |
ccaatccatgggattagaatcacgaacttaatt |
35369224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 124 - 333
Target Start/End: Complemental strand, 35378323 - 35378114
Alignment:
| Q |
124 |
gtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaatctggttgt |
223 |
Q |
| |
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|||||||| || |||||||||||||||||||||||||||||||| || |||| |||||||||||||| || ||||| | |||| ||||||| || |||| |
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| T |
35378323 |
gtttctctgtcgacttgttcgaattcaaggcctttgtcaacaattctgtttttgcctttagcagtttgatagcgtgagacagaagtccaaatttgattgt |
35378224 |
T |
|
| Q |
224 |
gtagcattctgatcaacataaaaggaaatatgacatggtacactggatccctttcaccccatatgaaagagtacatgctatgagcaatccacgggcttag |
323 |
Q |
| |
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|||||||||||| ||| |||||||||||||| || ||| ||||| |||||||||||||||||||||| ||| ||||||||||||||||| ||| ||| |
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| T |
35378223 |
gtagcattctgaccaatgcaaaaggaaatatgatatagtatactgggtccctttcaccccatatgaaagtgtatatgctatgagcaatccatgggattac |
35378124 |
T |
|
| Q |
324 |
aatcatgaac |
333 |
Q |
| |
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||||| |||| |
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|
| T |
35378123 |
aatcacgaac |
35378114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 115 - 333
Target Start/End: Complemental strand, 19683783 - 19683565
Alignment:
| Q |
115 |
aaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaa |
214 |
Q |
| |
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||||||||||||||||| || ||||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||| | |
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| T |
19683783 |
aaccaattggtttctctgtcgacttggtcgaattccaggcctttgtcaacaattcttctttttcctttagcagtttggtagcgtgagatagaaatccata |
19683684 |
T |
|
| Q |
215 |
tctggttgtgtagcattctgatcaacataaaaggaaatatgacatggtacactggatccctttcaccccatatgaaagagtacatgctatgagcaatcca |
314 |
Q |
| |
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|||| || ||||||||||||| ||| ||| |||| ||||||| || ||| ||| || | ||| ||||||| |||||||| ||||||||||||||||| |
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| T |
19683683 |
tctgattatgtagcattctgaccaatatataagggaatatgagatagtaggttgggtctcgttccacccatataaaagagtatatgctatgagcaatcca |
19683584 |
T |
|
| Q |
315 |
cgggcttagaatcatgaac |
333 |
Q |
| |
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|||||||||||||| |||| |
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| T |
19683583 |
cgggcttagaatcacgaac |
19683565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 115 - 333
Target Start/End: Original strand, 19632560 - 19632778
Alignment:
| Q |
115 |
aaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaa |
214 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||| |||| |||||||||||| || |||| |||||||||||||| || ||||| ||||||||||| | |
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| T |
19632560 |
aaccagttggtttctctgtcgacttgttcgaattctaggcatttgtcaacaattctgtttttgcctttagcagtttgatagcgtgagatagaaatccaga |
19632659 |
T |
|
| Q |
215 |
tctggttgtgtagcattctgatcaacataaaaggaaatatgacatggtacactggatccctttcaccccatatgaaagagtacatgctatgagcaatcca |
314 |
Q |
| |
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||||| ||||||||||||| | |||||| |||||||||||| || ||| ||| ||| ||| |||||||||||||||| ||||||||||||||||| |
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| T |
19632660 |
tctggctgtgtagcattctcacaaacatataaggaaatatgatatagtatgatgggtcctgttccacccatatgaaagagtatatgctatgagcaatcca |
19632759 |
T |
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| Q |
315 |
cgggcttagaatcatgaac |
333 |
Q |
| |
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|| |||||||||| |||| |
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| T |
19632760 |
tggacttagaatcacgaac |
19632778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 19684091 - 19684048
Alignment:
| Q |
9 |
aatatttgatcatccctgcaaatgccacacagtcaaaatcttaa |
52 |
Q |
| |
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|||||||||||||||||||||||| |||||| | |||||||||| |
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| T |
19684091 |
aatatttgatcatccctgcaaatgtcacacaatgaaaatcttaa |
19684048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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