View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17356_low_9 (Length: 335)
Name: NF17356_low_9
Description: NF17356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17356_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 5 - 321
Target Start/End: Complemental strand, 38069803 - 38069487
Alignment:
| Q |
5 |
gagtgagatgaagctttgtgaggaatatacttgtgtgatctctcatggacctaatccaagaaccactcacatattcgataattgcgtcgtcgaagagagt |
104 |
Q |
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| T |
38069803 |
gagtgagatggagctttgtgaggaatatacttgtgtgatctctcatggacctaatccaagaaccactcacatattcgataattgcgtcgtcgaagagagt |
38069704 |
T |
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| Q |
105 |
tactgttctctgccacaaaacaattctaactcatcttatggaaattttcttagagtttgctacacttgcaagaaacatcttgagcagacaaaagatatat |
204 |
Q |
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| T |
38069703 |
tactgttctctgccacaaaacaattctaactcatcttatggaaattttcttagagtttgctacacttgcaagaaacatcttgagcagacaaaagatatat |
38069604 |
T |
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| Q |
205 |
ttatttataggtgtgtatannnnnnnncttctagttttctacttttgcacttcgcattagttcttatattgcatttagatttagatttaaatgatatctc |
304 |
Q |
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| T |
38069603 |
ttatttataggtgtgtatattttttttcttctagttttctacttttgcacttcgcattagttcttatattgcatttagatttagatttaaatgatatctc |
38069504 |
T |
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| Q |
305 |
attaaatatggtataag |
321 |
Q |
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| T |
38069503 |
attaaatatggtataag |
38069487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 113
Target Start/End: Original strand, 31876084 - 31876192
Alignment:
| Q |
5 |
gagtgagatgaagctttgtgaggaatatacttgtgtgatctctcatggacctaatccaagaaccactcacatattcgataattgcgtcgtcgaagagagt |
104 |
Q |
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| T |
31876084 |
gagtgagatggaactttctgaagaatacacatgtgtgatatctcatggaccaaacccaaaaacaactcatatatttgataattgtgttgtggaagaaagt |
31876183 |
T |
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| Q |
105 |
tactgttct |
113 |
Q |
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| T |
31876184 |
tactgttct |
31876192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 31876223 - 31876292
Alignment:
| Q |
147 |
aattttcttagagtttgctacacttgcaagaaacatcttgagcagacaaaagatatatttatttataggt |
216 |
Q |
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| T |
31876223 |
aattttcttagcttttgttacacttgcaaaaatcatcttgagcatacaaaagacatcttcatttacaggt |
31876292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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