View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17357_high_10 (Length: 405)
Name: NF17357_high_10
Description: NF17357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17357_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 3e-95; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 127 - 395
Target Start/End: Original strand, 35373158 - 35373425
Alignment:
| Q |
127 |
tattagtctattttaattattnnnnnnntctgcaaatgacatgtggtggaaatccacacannnnnnnnnnaccatttttcagtgtgttggttctaatgta |
226 |
Q |
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| T |
35373158 |
tattagtctattttaattattaaaaaaatctgcaaatgacatgtggtggaaatccacacatattttttt-accatttttcagtgtgttggctctaatgta |
35373256 |
T |
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| Q |
227 |
attggctctaatataatttgagacgcgttcggtaattaatttgttgaatgttcgtgaactaaataatctaaacacaagttgaaaactaagtctataatta |
326 |
Q |
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| T |
35373257 |
attggctctaatataatttgagaagcgttcggtaattaatttgttgaacgttcgtgaactaaataacctaaacacaagttgaaaactaagtctataatta |
35373356 |
T |
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| Q |
327 |
actaaatgaaatgaacgtgagctatgaatgttcaatatgtttattcataagttggtttgattgtctgtg |
395 |
Q |
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| T |
35373357 |
actaaatgaaataaacgtgagctatgaatgttcgacttgtttattcataagttggtttgattgtttgtg |
35373425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 35373065 - 35373161
Alignment:
| Q |
1 |
tgcactttgagcccttaaatttattataattttccaggtgaagcatcctttgcaatatttatgcgtttt-cccctttttaattcattttcttttatt |
96 |
Q |
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| T |
35373065 |
tgcactttgggcccttaaatttattataattttccaggtgaagcatcctttgcaatatttatgcgttttccccctttttaattcattttcttttatt |
35373161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 395
Target Start/End: Original strand, 35369986 - 35370148
Alignment:
| Q |
228 |
ttggctctaatataatttgagacgcgttcggtaattaatttgttgaat---gttcgtgaactaaataatctaaacacaagttgaaaactaagtctataat |
324 |
Q |
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| T |
35369986 |
ttggctccaatatagttttagactcgttcggtaattgattcgttgaagttagttcgtgaactaaatgacctaaacacaagttaaaaattaagtct---at |
35370082 |
T |
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| Q |
325 |
taactaaatgaaatgaacgtgagctatgaatgttcaatatgtttattcataagttggtttgattgtctgtg |
395 |
Q |
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| T |
35370083 |
taact-----agatgaatatgagcaatgaatgttcgacttgtttattcagaagttggtttgattgtttgtg |
35370148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 35369851 - 35369890
Alignment:
| Q |
11 |
gcccttaaatttattataattttccaggtgaagcatcctt |
50 |
Q |
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| T |
35369851 |
gcccttaactttattataattttccaggtgaagcaccctt |
35369890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 35367185 - 35367252
Alignment:
| Q |
78 |
taattcattttcttttattgttttcctaa--acgtacttatcccaagattatattagtctattttaat |
143 |
Q |
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| T |
35367185 |
taattcattttcttttattgttttactaaacacttaatcatcccaaaattacattaatctattttaat |
35367252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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