View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17357_high_17 (Length: 305)
Name: NF17357_high_17
Description: NF17357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17357_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 36061602 - 36061332
Alignment:
| Q |
19 |
catatgataagctttttaatcatgtatgtcttcttatacaggggacaggatattgaaagcctagatgtgttgagacaaggtttcactcatgccttcttga |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36061602 |
catatcataagctttttaatcatgtatgtcttcttatacaggggacaggatattgaaagcctagatgtgttgagacaaggtttcactcatgccttcttga |
36061503 |
T |
|
| Q |
119 |
tgacattcaacaagaaagaagattttgctgcatttcagagccatccaagtcatgttgagttctctgaaaagttttcaacagctattgaaaagattgtgct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36061502 |
tgacattcaacaagaaagaagattttgctgcatttcagagccatccaagtcatgttgagttctctgaaaagttttcaacagctattgaaaagattgtgct |
36061403 |
T |
|
| Q |
219 |
gcttgatttcccatcaaaccttgttaagccagtaaaggaagcagcataatcatgaagaataaagatatttc |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36061402 |
gcttgatttcccatcaaaccttgttaagccagtaaaggaagcagcataatcatgaagaatgaagatatttc |
36061332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 128
Target Start/End: Original strand, 20052498 - 20052532
Alignment:
| Q |
94 |
caaggtttcactcatgccttcttgatgacattcaa |
128 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
20052498 |
caaggttttactcatgccttcttgatgacattcaa |
20052532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University