View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17357_high_18 (Length: 303)
Name: NF17357_high_18
Description: NF17357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17357_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 18203986 - 18203694
Alignment:
| Q |
1 |
atgaagagagggatggttctaggaaggaatttcagaaggttttggaaactgagccggagaattggcaggcggttgttcgtgctttcgagagagttaacaa |
100 |
Q |
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| T |
18203986 |
atgaagagagggatggttctaggaaggagtttcagaaggttttggaaactgagccggagaattggcaggcggttgttcgtgctttcgagagagttaacaa |
18203887 |
T |
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| Q |
101 |
ggttgatcatcttaacttcagtatatttttgtactttatttatggttgattgttcaattgtttattgtgtgttgaatatcaagttatgaaccacttacac |
200 |
Q |
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| T |
18203886 |
ggttgatcatcttaacttcagtatatttttgcactttatttatggttgaatgttcaattgtttattgtgtgttgaatatcaagttatgaaccacttacac |
18203787 |
T |
|
| Q |
201 |
aaatattgggcacaacaatgtaacatggatatcgataatagattgataaaaatgaaagcgattgaatgtagtcggtagtcatacatgtctgtg |
293 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18203786 |
aaatattgggcacaacactgtaacatggatatcgataatagattgataaaaatgaaagcgattgaatgtagtcggtagtcatacatgtctgtg |
18203694 |
T |
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