View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17357_high_20 (Length: 297)
Name: NF17357_high_20
Description: NF17357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17357_high_20 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 13228037 - 13227772
Alignment:
| Q |
16 |
aaaataccaaaaattcctcgttatttatatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctatttcgtctttcgtttcgatag |
115 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13228037 |
aaaataccaaacattcctcgttatttatatttattcttaagcaagtcccaaaaagtccttagttgagccatcatttctatttcgtctttcgtttcgatag |
13227938 |
T |
|
| Q |
116 |
atatatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13227937 |
atatatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagaccctgctc |
13227838 |
T |
|
| Q |
216 |
atggattaacgaaaatgtgcagaagctctatttgcctctgccattctatgagtctcttgctttttg |
281 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13227837 |
atggattaacgaaaatgtgcaaaagctctatttgcctctgccattctatgagtctcttgctttttg |
13227772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 135 - 283
Target Start/End: Original strand, 53883670 - 53883812
Alignment:
| Q |
135 |
ttctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatggattaacgaaaatgtg |
234 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||| |
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| T |
53883670 |
ttctttttctattgattcttttccaattat------ggatggatccatacataggtctatgtgtgtgtatagatcctgctcattgattaatgaaaatgtg |
53883763 |
T |
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| Q |
235 |
cagaagctctatttgcctctgccattctatgagtctcttgctttttgtg |
283 |
Q |
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| T |
53883764 |
caaaagatctatttgcctctgccattctatgagtctcttcctttttgtg |
53883812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 47522823 - 47522608
Alignment:
| Q |
16 |
aaaataccaaaaattcctcgttatttatatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctatttcgtctttcgtttcgatag |
115 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47522823 |
aaaataccaaacattcctggttatttatatttattcttaagcaagtccccaaaagtgtttagttgagccatcatttctatttcgtctttcgtttcgataa |
47522724 |
T |
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| Q |
116 |
atatatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctc |
215 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
47522723 |
atatatcgattaattccgattctttttctatcgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtacatagatcctactc |
47522624 |
T |
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| Q |
216 |
atggattaacgaaaat |
231 |
Q |
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|||||||||||||||| |
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| T |
47522623 |
atggattaacgaaaat |
47522608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 43 - 283
Target Start/End: Complemental strand, 42680336 - 42680102
Alignment:
| Q |
43 |
tatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctatttcgtctttcgtttcgatagatatatcgattaattccgattcttttt |
142 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42680336 |
tatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctattttgtctttcgtttccatagatatatcgattaattccgattcttttt |
42680237 |
T |
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| Q |
143 |
ctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatggattaacgaaaatgtgcagaagct |
242 |
Q |
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| T |
42680236 |
ctattgattcttttccaa------ttatgtatggatccatacataggtctacgtgtgtatatagatcctactcatggattaacgaaaatgtgcaaaagct |
42680143 |
T |
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| Q |
243 |
ctatttgcctctgccattctatgagtctcttgctttttgtg |
283 |
Q |
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|||||||| |||||||||||| ||||||||| ||||||||| |
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| T |
42680142 |
ctatttgcttctgccattctacgagtctcttcctttttgtg |
42680102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 164
Target Start/End: Original strand, 35934647 - 35934768
Alignment:
| Q |
43 |
tatttattcttaagcaagtccccaaaagt-gcttagttgagccatcatttctatttcgtctttcgtttcgatagatatatcgattaattccgattctttt |
141 |
Q |
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||||||||||||||||||||| ||||||| | |||||| |||||||| |||||||| |||||||||||||||||||||||| ||||||| |||| |||| |
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| T |
35934647 |
tatttattcttaagcaagtcctcaaaagttggttagttaagccatcaattctattt-gtctttcgtttcgatagatatatctattaattatgattatttt |
35934745 |
T |
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| Q |
142 |
tctattgattcttttccaattat |
164 |
Q |
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||||||||||||||||||||||| |
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| T |
35934746 |
tctattgattcttttccaattat |
35934768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 203 - 281
Target Start/End: Complemental strand, 192063 - 191985
Alignment:
| Q |
203 |
atagatcctgctcatggattaacgaaaatgtgcagaagctctatttgcctctgccattctatgagtctcttgctttttg |
281 |
Q |
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|||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
192063 |
atagattctgttcatggattaacgaaaatgtgcaagagctctatttgcctctgccattctatgagtcgcttcctttttg |
191985 |
T |
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