View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17357_high_8 (Length: 439)
Name: NF17357_high_8
Description: NF17357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17357_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 56 - 425
Target Start/End: Original strand, 5458013 - 5458382
Alignment:
| Q |
56 |
ctttgacatcacatactcacggtcaaggtgcacgaccataatttaaataaaaacgttaaatgttacggaacattgtcatcccaaaactgataagtgtttt |
155 |
Q |
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| T |
5458013 |
ctttgacatcacatattcacggtcaaggtgcacgaccataatttaaataaaaacgttaaatgttacgaaacattgtcatcccaaaactgataagtgtttt |
5458112 |
T |
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| Q |
156 |
gattttgaaactcacatcgtgtgtgtgaatagaaatgctttgttaccacaaattattgaaaagaaa-gagagaaaaatatactttggtggtcaatgatgc |
254 |
Q |
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| T |
5458113 |
gatttttaaactcgcatcgtgtgtgtgaatagaaatgctttgttaccacaaattattgaaaagaaaagaaagaaaaatatactttggtggtcaatgatgc |
5458212 |
T |
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| Q |
255 |
aagttacttatgtttgtgtttgagtgcagtcacacttggtttggaaaatttggcaactttctcgctagctgtgaactcggtgccatatttcatgggaatc |
354 |
Q |
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| T |
5458213 |
a-gttacttatgtttgtgtttgagtgcagtcacacttggtttggaaaatttggcaactttctcgctagctgtgaactcggtgccatatttcatgggaatc |
5458311 |
T |
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| Q |
355 |
atgcattatcaactagaagatgctgctaacatgctcaccaactatatgggtgtcagttacattctctctat |
425 |
Q |
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| T |
5458312 |
atgcattatcaactagaagatgctgctaacatgctcaccaactatatgggtgtcagttacattctctctat |
5458382 |
T |
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