View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17357_low_1 (Length: 749)
Name: NF17357_low_1
Description: NF17357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17357_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 67 - 527
Target Start/End: Original strand, 1036809 - 1037269
Alignment:
| Q |
67 |
aaataagcccaataacccaatattattcctatttgcactccacctcttcattaagtgactttctccacgagtggctcttcttaattttccaactgtcgcg |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036809 |
aaataagcccaataacccaatattattcctatttgcactccacctcttcattaagtgactttctccacgagtggctcttcttaattttccaactgtcgcg |
1036908 |
T |
|
| Q |
167 |
acacgatctttgtagtatacaatgcgatttaaatagtgatgaaacacttctgaactttcctatatctcgcgaagcgggtgaggcaatggcgaaacacttc |
266 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036909 |
acacgatctttgtagtatacgatgcgatttaaatagtgatgaaacacttctgaactttcgtatatctcgcgaagcgggtgaggcaatggcgaaacacttc |
1037008 |
T |
|
| Q |
267 |
taactttccatcagtatcacggtgcgtggctcgttgcaagggacacgagtcaggacgaggctaatccttatgcttttctttattcattgtctcatttatc |
366 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1037009 |
taactttccatcggtatcacggtgtgtggctcattggaagggacacgagtcgggacgaggctaatccttatgcttttctttattcattgtctcatttatc |
1037108 |
T |
|
| Q |
367 |
ttcactgaaacgtctgtaataactatgccccaaaatttaacatgtcaaaacttgtaataagcatagtacaatcacgaagttgtctagtttgggtatattg |
466 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
1037109 |
ctcactgaaacgtctataataactatgccccaaaatttaacatgtcaaaacttgtaataagcatagtacagtcacaaagttgtctagtttgggtatattt |
1037208 |
T |
|
| Q |
467 |
ttatagtttcaaagttattttcccatttatactcttgcatgacctttgaacaatcctttac |
527 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||| |
|
|
| T |
1037209 |
ttatagtttcaaagttattttcccatttatactcttgcatgacttttgatcgatcctttac |
1037269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 590 - 730
Target Start/End: Original strand, 1037329 - 1037473
Alignment:
| Q |
590 |
cctatataatttcatgtcatcaaggtgcattatcaacacgagggttctgatggatatgtgtctgaggttcatgtgagagatcatctaaaacagtaaggtg |
689 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1037329 |
cctatataatttcatgtcatcaagttgcattatcaacacaagggttctgatggatatgtgtctgaggttcatgtgagagatcatctaaaacagtaaggtg |
1037428 |
T |
|
| Q |
690 |
tgtaataggtgaa----ctggagttctgagatagaaaatagttcc |
730 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1037429 |
tgtaataggtgaactggctggagttctgagatagaaaatagttcc |
1037473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 374 - 494
Target Start/End: Original strand, 24763426 - 24763546
Alignment:
| Q |
374 |
aaacgtctgtaataactatgccccaaaatttaacatgtcaaaacttgtaataagcatagtacaatcacgaagttgtctagtttgggtatattgttatagt |
473 |
Q |
| |
|
||||||| ||||| | ||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| ||| || || |
|
|
| T |
24763426 |
aaacgtccgtaatgattataccccaaaatttaacatgataaaacttgtaataagcatatcttggtcacgaagttgactagtttgggtgaatttccatggt |
24763525 |
T |
|
| Q |
474 |
ttcaaagttattttcccattt |
494 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
24763526 |
ttcaaagtcattttcccattt |
24763546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 413 - 459
Target Start/End: Original strand, 4962783 - 4962829
Alignment:
| Q |
413 |
aaaacttgtaataagcatagtacaatcacgaagttgtctagtttggg |
459 |
Q |
| |
|
||||| |||||||||||||||||| | || ||||||||||||||||| |
|
|
| T |
4962783 |
aaaacctgtaataagcatagtacagttacaaagttgtctagtttggg |
4962829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 461
Target Start/End: Original strand, 9025848 - 9025937
Alignment:
| Q |
372 |
tgaaacgtctgtaataactatgccccaaaatttaacatgtcaaaacttgtaataagcatagtacaatcacgaagttgtctagtttgggta |
461 |
Q |
| |
|
||||| ||||||||| | ||| |||||| |||||||| |||| |||| |||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
9025848 |
tgaaatgtctgtaatgattataccccaagtattaacatgataaaaattgtgataaacatagtacaatcacagagttgtctagtttgggta |
9025937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 413 - 460
Target Start/End: Original strand, 34119849 - 34119896
Alignment:
| Q |
413 |
aaaacttgtaataagcatagtacaatcacgaagttgtctagtttgggt |
460 |
Q |
| |
|
||||||||||||||| ||||||| |||| |||||||||||||||||| |
|
|
| T |
34119849 |
aaaacttgtaataagtatagtacggtcacaaagttgtctagtttgggt |
34119896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 320 - 457
Target Start/End: Original strand, 16649305 - 16649442
Alignment:
| Q |
320 |
gacgaggctaatccttatgcttttctttattcattgtctcatttatcttcactgaaacgtctgtaataactatgccccaaaatttaacatgtcaaaactt |
419 |
Q |
| |
|
||||||| | |||||| ||||||||||||||| || || ||||| | |||| ||| || ||||| ||||| ||| || | |||||||| |||| || |
|
|
| T |
16649305 |
gacgaggttgatccttttgcttttctttattccttatcacatttcttatcaccaaaatgtatgtaacgactataccctaataattaacatgataaaaatt |
16649404 |
T |
|
| Q |
420 |
gtaataagcatagtacaatcacgaagttgtctagtttg |
457 |
Q |
| |
|
||||||| |||||| ||||||| ||||||||||||| |
|
|
| T |
16649405 |
gtaataaatatagtatgatcacgaggttgtctagtttg |
16649442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 337 - 458
Target Start/End: Original strand, 16380300 - 16380421
Alignment:
| Q |
337 |
tgcttttctttattcattgtctcatttatcttcactgaaacgtctgtaataactatgccccaaaatttaacatgtcaaaacttgtaataagcatagtaca |
436 |
Q |
| |
|
|||||||||| |||| ||||| |||| || |||| |||| ||| ||||| ||||| |||||| | |||||||| ||||||| || ||||||||||||| |
|
|
| T |
16380300 |
tgcttttcttcattctctgtcttatttctcatcaccgaaatgtcggtaatgactataccccaagaattaacatgctaaaacttatagtaagcatagtaca |
16380399 |
T |
|
| Q |
437 |
atcacgaagttgtctagtttgg |
458 |
Q |
| |
|
| | ||||||||| |||||| |
|
|
| T |
16380400 |
gttataaagttgtctggtttgg |
16380421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University