View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17357_low_10 (Length: 429)
Name: NF17357_low_10
Description: NF17357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17357_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 43222627 - 43222218
Alignment:
| Q |
1 |
gtgggaatgaggaaaatcaagtctcagtgttcgatctctggaatgaacgggcctgtgggaattaggaaaatcaggtctcagtgtttgctctccgagatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43222627 |
gtgggaatgaggaaaatcaagtctcagtgttcgatctctggaatgaacgggcctgtgggaattaggaaaatcaggtctcagtgtttgctctccgagatgg |
43222528 |
T |
|
| Q |
101 |
atgcttttgatctctctggcttgcttgacaatccaaggctaaacatagagagacagagatcagttgatgacagtttactcagtgaactgtccattggagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43222527 |
atgcttttgatctctctggcttgcttgacaatccaaggctaaacatagagagacagagatcagttgatgacagtttactcagtgaactgtccattggagc |
43222428 |
T |
|
| Q |
201 |
aagatcactttcatctgctcagaactcgttcgagcctcagccaatgcttgctgatgcctgggaatctctcaggaagtctctagtctatttcaatggcaaa |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43222427 |
aagatcattttcatctgctcagaactcgttcgagcctcagccaatgcttgctgatgcctgggaatctctcaggaagtctctagtctatttcaatggcaaa |
43222328 |
T |
|
| Q |
301 |
cctgtaggcacacttgcagctgttgatcatcaatcagaagaagttctaaattatgatcaggtgagcgaattccttaatcagtactaaaattgtctgtgat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43222327 |
cctgtaggcacacttgcagctgttgatcatcaatcagaagaagttctaaattatgatcaggtgagcgaattccttaatcagtactaaaattgtctgtgat |
43222228 |
T |
|
| Q |
401 |
ggcttccacg |
410 |
Q |
| |
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|||||||||| |
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| T |
43222227 |
ggcttccacg |
43222218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 210 - 391
Target Start/End: Complemental strand, 43232831 - 43232654
Alignment:
| Q |
210 |
ttcatctgctcagaactcgttcgagcctcagccaatgcttgctgatgcctgggaatctctcaggaagtctctagtctatttcaatggcaaacctgtaggc |
309 |
Q |
| |
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||||||||||| |||||||| ||||| || |||||| |||||||||||||||||||||||||||| ||||||||| |||||| || |||||| ||| |
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| T |
43232831 |
ttcatctgctcgcaactcgtttgagccgcatccaatggttgctgatgcctgggaatctctcaggaaatctctagtccatttcagaggtgcacctgttggc |
43232732 |
T |
|
| Q |
310 |
acacttgcagctgttgatcatcaatcagaagaagttctaaattatgatcaggtgagcgaattccttaatcagtactaaaatt |
391 |
Q |
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||| |||||||||||||||||||| |||| |||||||||||||| |||||||| ||||| ||||||||||||||||||| |
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| T |
43232731 |
acaattgcagctgttgatcatcaagcagaggaagttctaaattacgatcaggt----gaatttcttaatcagtactaaaatt |
43232654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 170
Target Start/End: Complemental strand, 43233045 - 43232931
Alignment:
| Q |
56 |
tgggaattaggaaaatcaggtctcagtgtttgctctccgagatggatgcttttgatctctctggcttgcttgacaatccaaggctaaacatagagagaca |
155 |
Q |
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|||||||||||||| || | |||||||||| | | | |||||||||| ||| |||||| || | |||||||||| || |||||||||||||||||||| |
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| T |
43233045 |
tgggaattaggaaagtcggctctcagtgttcgatggctgagatggatgatttcgatctcactcgtttgcttgacaggccgaggctaaacatagagagaca |
43232946 |
T |
|
| Q |
156 |
gagatcagttgatga |
170 |
Q |
| |
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||||||| ||||||| |
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|
| T |
43232945 |
gagatcatttgatga |
43232931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 43222640 - 43222597
Alignment:
| Q |
42 |
aatgaacgggcctgtgggaattaggaaaatcaggtctcagtgtt |
85 |
Q |
| |
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||||||||||| ||||||||| |||||||||| ||||||||||| |
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|
| T |
43222640 |
aatgaacgggcttgtgggaatgaggaaaatcaagtctcagtgtt |
43222597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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