View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17357_low_11 (Length: 428)
Name: NF17357_low_11
Description: NF17357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17357_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 20 - 416
Target Start/End: Original strand, 39375734 - 39376135
Alignment:
| Q |
20 |
cctcatccacctccccttcctgtatgtttgaaaaaccctaagacatttcagcagccatagaattaacagtaacaaagaaacacagacaaattcnnnnnnn |
119 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39375734 |
cctcatccacctcccctacctgtatgtttgaaaaaccctaagacatttcagcagccatagaattaacagtaacaaagaaacacagacaaattcttttttt |
39375833 |
T |
|
| Q |
120 |
caggttcattaaataacaactgtagaccggagggagtaacaattaaattaacaagttttgcgaacgtcaaccttgtttttcttttcctggtcaggctcca |
219 |
Q |
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| T |
39375834 |
caggttcattaaataactactgtagaccggagggagtaacaattaaattaacaagttttgcgaacgtcaaccttgtttttcttttcctgctcgggctcca |
39375933 |
T |
|
| Q |
220 |
acacctgttaaatgatataaaacagtgaataaa-----caaacaaaaccagatacataacatattaatgcaggagatggtatagttataaacctgattat |
314 |
Q |
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|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39375934 |
acgcctgttaaatgatataaaacagtgaataaattaaacaaacaaaaccagatacataacatattaatgcaggagatggtatagttataaacctgattat |
39376033 |
T |
|
| Q |
315 |
catcttcgtcgaaaatagcatcagcaagagcccgataattctcttcttcaataagctcccagtttttatcatacaatttaagcagtttcttcaacacagg |
414 |
Q |
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| T |
39376034 |
catcttcgtcgaaaatagcatcagcaagagcccgataattctcttcttcaataagctcccagtttttatcatacaatttaagcagtttcttcaacacagg |
39376133 |
T |
|
| Q |
415 |
tt |
416 |
Q |
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|| |
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| T |
39376134 |
tt |
39376135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 394
Target Start/End: Original strand, 35689305 - 35689353
Alignment:
| Q |
346 |
ccgataattctcttcttcaataagctcccagtttttatcatacaattta |
394 |
Q |
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||||||||| || ||||||||||||||||| |||||||||||||||||| |
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| T |
35689305 |
ccgataattgtcatcttcaataagctcccattttttatcatacaattta |
35689353 |
T |
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