View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17357_low_15 (Length: 356)
Name: NF17357_low_15
Description: NF17357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17357_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 347
Target Start/End: Complemental strand, 10238723 - 10238400
Alignment:
| Q |
19 |
ataaagcctttccaattcttatttcctccagcagcccacaaagacttaaaagtaaagtgacgaaatttggaggaagcaagcaccgtcatcaaaacacact |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
10238723 |
ataaagcctttccaattcttatttcctccagcagcccacaaagacttaaaaataaagtgaagaaatttggaggaagc-----ccgtcatcaaaacacact |
10238629 |
T |
|
| Q |
119 |
accggaaaaccgcatatcataccttgattgtaaaatcacatcgaagaaagagattagatgccgattccactctcctatgacaaaggacgcacgacactgc |
218 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10238628 |
accggaaaacggcatatcataccttgattgtaaaatcacatcaaagaaagagattagatgacgattccactctcctatgacaaaggacacacgacactgc |
10238529 |
T |
|
| Q |
219 |
gtcattatcatggataattcctatatgccccaaattactcctagatggaattttatcatgcaattgttgccaagaaaaagcaaccacttatcctccccaa |
318 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10238528 |
gtcattatcatggataactcctatatgccccaaattactcctagatggaattttatcatgcaattgttgccaagaaaaagcaaccacttatcctccccaa |
10238429 |
T |
|
| Q |
319 |
tttcaccgagaaatctccgccctccccta |
347 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10238428 |
tttcaccgagaaatctccgccctccccta |
10238400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University