View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17357_low_2 (Length: 736)
Name: NF17357_low_2
Description: NF17357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17357_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 654; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 16 - 727
Target Start/End: Original strand, 33123676 - 33124376
Alignment:
| Q |
16 |
cagctatggttgcaaccaatactaagtatgaagctgcatcataacataaatcacttcacgtcaaacacaattataacaaaattaattttacaaaatcatc |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
33123676 |
cagctatggttgcaaccaatactaagtatgaagctgcatcataacataaatcacttcacttcaaaca-----------aaattaattttacaaaatcatc |
33123764 |
T |
|
| Q |
116 |
atgtttgtctaatatattgcttcttaccatagggtattgggaagcgatctagatgataatattgtaccactgacatggaggaagagaaaaccatagcaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33123765 |
atgtttgtctaatatattgcttcttaccatagggtattgggaagcgatctagatgataatattgtaccactgacatggaggaagagaaaaccatagcaaa |
33123864 |
T |
|
| Q |
216 |
agttgatgtagcactagctacctgccacattgaaaaatattcatcaaagttatataaagtgtgacactgataattattttacaactgttccgaggaaatt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33123865 |
agttgatgtagcactagctacctgccacattgaaaaatattcatcaaagttatataaagtgtgacactgataattattttacaactgttccgaggaaatt |
33123964 |
T |
|
| Q |
316 |
taaaatatgtctcttgagattacaaagtcaaactcttaccactaaaccgacatctcattgacatattcgattgagtgatatattcacgtataaactaaag |
415 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
33123965 |
taaaatatgtctcttgagattacaaagtcagactcttaccactaaaccgacatcttattgacatattcgattgagttatatattcatgtataaactaaag |
33124064 |
T |
|
| Q |
416 |
attagtaaatgagaaagaatgaatgagtttgtacctgaggaggaattcccaattccaaaaacaatggtcccaaaatgaagccaccacctagaccaagcaa |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33124065 |
attagtaaatgagaaagaatgaatgagtttgtacctgaggaggaattcccaattccaaaaacaatggtcccaaaatgaagccaccacctagaccaagcaa |
33124164 |
T |
|
| Q |
516 |
accactaaccataccagctattattccacagaagcagtaaagacagatcttatgaaacttccaagtgatttcctttccccttgatgcaattactctagtt |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33124165 |
accactaaccataccagctattattccacagaagcagtaaagacagatcttatgaaacttccaagtgatttcctttccccttgatgcaattactctagtt |
33124264 |
T |
|
| Q |
616 |
cctttgcataagcatatggcttcaaaaagtgtaacagaaattgcaataggcaccttaaattgataaatagcacaccaaatttcagttagaccttgcagag |
715 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33124265 |
cctttgcataagcatatggcttcaaaaagtgtaacagaaattgcaataggcaccttaaattgataaatagcacaccaaatttcagttagaccttgcagag |
33124364 |
T |
|
| Q |
716 |
aaatagtattat |
727 |
Q |
| |
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|||||||||||| |
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|
| T |
33124365 |
aaatagtattat |
33124376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 8e-20; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 445 - 543
Target Start/End: Complemental strand, 7570925 - 7570827
Alignment:
| Q |
445 |
tgtacctgaggaggaattcccaattccaaaaacaatggtcccaaaatgaagccaccacctagaccaagcaaaccactaaccataccagctattattcca |
543 |
Q |
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|||||||| ||||||||||||| ||| | ||| | ||| ||||||||||||||||| |||||||||||||| || | ||||||||||||||||| |||| |
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| T |
7570925 |
tgtacctgcggaggaattcccatttctagaaagagtggccccaaaatgaagccacctcctagaccaagcaaccctccaaccataccagctattactcca |
7570827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 7571551 - 7571464
Alignment:
| Q |
153 |
tgggaagcgatctagatgataatattgtaccactgacatggaggaagagaaaaccatagcaaaagttgatgtagcactagctacctgc |
240 |
Q |
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|||||||||||||| || |||||||| || |||||||||||||| || |||| ||| | ||| |||||||||||||| ||||||||| |
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| T |
7571551 |
tgggaagcgatctaaatagtaatattgcactactgacatggaggatgaaaaaagcatggaaaatgttgatgtagcacttgctacctgc |
7571464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 240
Target Start/End: Complemental strand, 7581771 - 7581685
Alignment:
| Q |
154 |
gggaagcgatctagatgataatattgtaccactgacatggaggaagagaaaaccatagcaaaagttgatgtagcactagctacctgc |
240 |
Q |
| |
|
||||||||||||| || |||||||| || |||||||||||||| || |||| ||| | ||| |||||||||||||| ||||||||| |
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| T |
7581771 |
gggaagcgatctaaatagtaatattgcactactgacatggaggatgaaaaaagcatggaaaatgttgatgtagcacttgctacctgc |
7581685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 38584667 - 38584722
Alignment:
| Q |
58 |
aacataaatcacttcacgtcaaacacaattataacaaaattaattttacaaaatca |
113 |
Q |
| |
|
||||||||||||||||| ||||| |||||| |||| ||||||||||||||| |||| |
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|
| T |
38584667 |
aacataaatcacttcacttcaaatacaattttaaccaaattaattttacaagatca |
38584722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 585 - 670
Target Start/End: Complemental strand, 7570782 - 7570697
Alignment:
| Q |
585 |
ttcctttccccttgatgcaattactctagttcctttgcataagcatatggcttcaaaaagtgtaacagaaattgcaataggcacct |
670 |
Q |
| |
|
|||||||||| ||||| ||| ||||| ||||||||| ||| ||||| ||||||||||| |||||||| || |||||||| |||| |
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| T |
7570782 |
ttcctttccctttgatttaatcactcttgttcctttgtatatgcatacagcttcaaaaagcgtaacagagatagcaataggaacct |
7570697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 7571877 - 7571840
Alignment:
| Q |
16 |
cagctatggttgcaaccaatactaagtatgaagctgca |
53 |
Q |
| |
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||||||||||||||||||| || ||||||||||||||| |
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|
| T |
7571877 |
cagctatggttgcaaccaaaacaaagtatgaagctgca |
7571840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 7582072 - 7582035
Alignment:
| Q |
16 |
cagctatggttgcaaccaatactaagtatgaagctgca |
53 |
Q |
| |
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||||||||||||||||||| || ||||||||||||||| |
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| T |
7582072 |
cagctatggttgcaaccaaaacaaagtatgaagctgca |
7582035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 324 - 365
Target Start/End: Complemental strand, 5399909 - 5399868
Alignment:
| Q |
324 |
gtctcttgagattacaaagtcaaactcttaccactaaaccga |
365 |
Q |
| |
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||||||| || |||||||||||||||||||||||| |||||| |
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|
| T |
5399909 |
gtctcttaaggttacaaagtcaaactcttaccactgaaccga |
5399868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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