View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17357_low_20 (Length: 306)

Name: NF17357_low_20
Description: NF17357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17357_low_20
NF17357_low_20
[»] chr4 (2 HSPs)
chr4 (4-294)||(20624949-20625239)
chr4 (15-186)||(24426843-24427014)
[»] chr5 (5 HSPs)
chr5 (4-294)||(23333385-23333675)
chr5 (15-238)||(24508419-24508642)
chr5 (95-304)||(34894524-34894733)
chr5 (96-187)||(32412449-32412540)
chr5 (62-154)||(7707717-7707808)
[»] chr2 (3 HSPs)
chr2 (8-291)||(40557370-40557653)
chr2 (8-250)||(25559786-25560028)
chr2 (77-187)||(268652-268762)
[»] chr6 (3 HSPs)
chr6 (4-152)||(21774510-21774658)
chr6 (4-238)||(8700155-8700389)
chr6 (123-151)||(20482211-20482239)
[»] chr3 (1 HSPs)
chr3 (4-304)||(20598866-20599166)
[»] chr7 (1 HSPs)
chr7 (95-187)||(35663793-35663885)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 4 - 294
Target Start/End: Original strand, 20624949 - 20625239
Alignment:
Q  4 tcaaccaaaatcttgtcttccccaattcattcttcaactttgtattctttttctccaactttgcaattttcaaatccctatcatcagtgaactcttcatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20624949 tcaaccaaaatcttgtcttccccaattcattcttcaactttgtattctttttctccaactttgcaattttcaaatccctatcatcagtgaactcttcatc 20625048  T
Q  104 aactaacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccgcaatttggattgtagccatctgtgaca 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||| ||||||||||    
T  20625049 aactaacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccaaaactttttcccacagtttggattgtagctatctgtgaca 20625148  T
Q  204 gttcgaacaactgattcttctccacacctgcattccgtgattgctctctttctaagactagaaccaacagacccagctgattgacccattt 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20625149 gttcgaacaactgattcttctccacacctgcattccgtgattgctctctttctgagactagaaccaacagacccagctgattgacccattt 20625239  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 24427014 - 24426843
Alignment:
Q  15 cttgtcttccccaattcattcttcaactttgtattctttttctccaactttgcaattttcaaatccctatcatcagtgaactcttcatcaactaacttga 114  Q
    ||||| ||| ||||||||| ||||||||| | ||| || |||| || |||||||||   ||||||||| |||||||| | ||||||||| | |||||| |    
T  24427014 cttgttttctccaattcatgcttcaacttggcatttttcttctgcagctttgcaatcaacaaatccctctcatcagtaagctcttcatccagtaacttaa 24426915  T
Q  115 agaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccgcaatttggat 186  Q
    | ||||||||||| || ||||| ||||| ||||||||| |||| ||||| ||  ||||||| ||||||||||    
T  24426914 aaaaactacaacctttatcaaagtgattcttgtagtttttgcatccccaaaatcttttcccacaatttggat 24426843  T

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Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 4 - 294
Target Start/End: Original strand, 23333385 - 23333675
Alignment:
Q  4 tcaaccaaaatcttgtcttccccaattcattcttcaactttgtattctttttctccaactttgcaattttcaaatccctatcatcagtgaactcttcatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23333385 tcaaccaaaatcttgtcttccccaattcattcttcaactttgtattctttttctccaactttgcaattttcaaatccctatcatcagtgaactcttcatc 23333484  T
Q  104 aactaacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccgcaatttggattgtagccatctgtgaca 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| ||||||||||    
T  23333485 aactaacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccacagtttgggttgtagctatctgtgaca 23333584  T
Q  204 gttcgaacaactgattcttctccacacctgcattccgtgattgctctctttctaagactagaaccaacagacccagctgattgacccattt 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  23333585 gttcgaacaactgattcttctccacacctgcattccgtgattgctctctttctgagactagaaccaacagatccagctgattgacccattt 23333675  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 15 - 238
Target Start/End: Original strand, 24508419 - 24508642
Alignment:
Q  15 cttgtcttccccaattcattcttcaactttgtattctttttctccaactttgcaattttcaaatccctatcatcagtgaactcttcatcaactaacttga 114  Q
    ||||| ||| ||||||||| ||||||||| | ||| || |||| || |||||||||   ||||||||| |||||||| | ||||||||| | |||||| |    
T  24508419 cttgttttctccaattcatgcttcaacttggcatttttcttctgcagctttgcaatcaacaaatccctctcatcagtaagctcttcatccagtaacttaa 24508518  T
Q  115 agaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccgcaatttggattgtagccatctgtgacagttcgaacaac 214  Q
    | ||||||||||| || ||| | ||||||||||||||  |||| ||||| ||  |||| || || ||||||||   |  ||| |||||||| ||||  ||    
T  24508519 aaaaactacaacctttatcatagtgatttttgtagttcttgcatccccaaaatctttttccacagtttggatttgtgttatcagtgacagtacgaatcac 24508618  T
Q  215 tgattcttctccacacctgcattc 238  Q
    ||||||||| |||||||| |||||    
T  24508619 tgattcttcaccacacctacattc 24508642  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 304
Target Start/End: Complemental strand, 34894733 - 34894524
Alignment:
Q  95 ctcttcatcaactaacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccgcaatttggattgtagcca 194  Q
    ||||||||| | |||||| || |||| |||||| || ||||| ||||| ||||| ||| |||| || || || |||||||| |||||||||||   |  |    
T  34894733 ctcttcatccagtaacttaaaaaaaccacaacctttatcaaagtgattcttgtaatttttgcatccacaaaattttttcccacaatttggattcgtgtta 34894634  T
Q  195 tctgtgacagttcgaacaactgattcttctccacacctgcattccgtgattgctctctttctaagactagaaccaacagacccagctgattgacccattt 294  Q
    || || ||||| ||||  |||| |||||| |||||||| ||||| || | ||||||  |||| | ||| ||||||||||| |||   ||||| |||||||    
T  34894633 tcagtaacagtacgaatcactgtttcttcaccacacctacattcagtcactgctcttcttctcatactcgaaccaacagatccataggattggcccattt 34894534  T
Q  295 tcttcgacat 304  Q
     ||| |||||    
T  34894533 gctttgacat 34894524  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 187
Target Start/End: Complemental strand, 32412540 - 32412449
Alignment:
Q  96 tcttcatcaactaacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccgcaatttggatt 187  Q
    ||||||||||||||| | ||| ||||||| || ||||||  |  |||||| |||||||| |||||||| || || ||||| |||||||||||    
T  32412540 tcttcatcaactaacctaaagtaactacatcctttgtcacttgaatttttatagtttctacaaccccaaaatttcttcccacaatttggatt 32412449  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 7707808 - 7707717
Alignment:
Q  62 ctttgcaattttcaaatccctatcatcagtgaactcttcatcaactaacttgaagaaactacaacccttgtcaaattgatttttgtagtttct 154  Q
    |||| |||| ||||||| ||||||||||   |  |||||||||| |||||| || ||||||||||| || |||||||||||||  ||||||||    
T  7707808 ctttacaatcttcaaattcctatcatcatctacttcttcatcaattaacttaaa-aaactacaacctttatcaaattgattttcatagtttct 7707717  T

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Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 40557653 - 40557370
Alignment:
Q  8 ccaaaatcttgtcttccccaattcattcttcaactttgtattctttttctccaactttgcaattttcaaatccctatcatcagtgaactcttcatcaact 107  Q
    |||| |||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||| | ||||||   |||||||||||||||    
T  40557653 ccaagatctggtcttccccaattgattcttcaattttgtattctttttctccaactttgcaatcttcaaatccttgtcatcacataactcttcatcaact 40557554  T
Q  108 aacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccgcaatttggattgtagccatctgtgacagttc 207  Q
    |||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||| || || ||||||||||||  |||||| |||||||    
T  40557553 aacttgaagaaaatacaacccttgtcatattgatttttgtagtttttgcaacccaagaacttttttccacagtttggattgtaggtatctgtaacagttc 40557454  T
Q  208 gaacaactgattcttctccacacctgcattccgtgattgctctctttctaagactagaaccaacagacccagctgattgaccca 291  Q
     ||||| || |||||||||||||||||||||||| |||||||||||||| | | | ||||| ||||||  ||||||||||||||    
T  40557453 taacaattgtttcttctccacacctgcattccgtaattgctctctttctcaaattcgaacctacagacatagctgattgaccca 40557370  T

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Target: chr2; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 25560028 - 25559786
Alignment:
Q  8 ccaaaatcttgtcttccccaattcattcttcaactttgtattctttttctccaactttgcaattttcaaatccctatcatcagtgaactcttcatcaact 107  Q
    |||| |||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||| | ||||||   |||||||||||||||    
T  25560028 ccaagatctagtcttccccaattgattcttcaattttgtattctttttctccaactttgcaatcttcaaatccttgtcatcacataactcttcatcaact 25559929  T
Q  108 aacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccgcaatttggattgtagccatctgtgacagttc 207  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| || || ||||||||||||  |||||| |||||||    
T  25559928 aacttgaagaaactacaacccttgtcatattgatttttgtagtttctgcaacccaagaacttttttccacagtttggattgtaggtatctgtaacagttc 25559829  T
Q  208 gaacaactgattcttctccacacctgcattccgtgattgctct 250  Q
     |||||||| |||||||||||||||||||||||  ||||||||    
T  25559828 taacaactgtttcttctccacacctgcattccgaaattgctct 25559786  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 187
Target Start/End: Complemental strand, 268762 - 268652
Alignment:
Q  77 atccctatcatcagtgaactcttcatcaactaacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccg 176  Q
    ||||||||||||||| | ||||||||| |  || ||||| || |||||||| || ||  ||||||| ||||||||| ||||  |||| ||| |||| ||     
T  268762 atccctatcatcagtaacctcttcatccaacaatttgaaaaagctacaacctttatctcattgattcttgtagtttttgcatgcccaaaacctttttcca 268663  T
Q  177 caatttggatt 187  Q
    |||||||||||    
T  268662 caatttggatt 268652  T

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Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 21774658 - 21774510
Alignment:
Q  4 tcaaccaaaatcttgtcttccccaattcattcttcaactttgtattctttttctccaactttgcaattttcaaatccctatcatcagtgaactcttcatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21774658 tcaaccaaaatcttgtcttccccaattcattcttcaactttgtattctttttctccaactttgcaattttcaaatccctatcatcagtgaactcttcatc 21774559  T
Q  104 aactaacttgaagaaactacaacccttgtcaaattgatttttgtagttt 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21774558 aactaacttgaagaaactacaacccttgtcaaattgatttttgtagttt 21774510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 8700155 - 8700389
Alignment:
Q  4 tcaaccaaaatcttgtcttccccaattcattcttcaactttgtattctttttctccaactttgcaattttcaaatccctatcatcagtgaactcttcatc 103  Q
    |||||||||||||||||||| | |   |  ||||||||||   ||| ||||||||||| || ||||| || | |||||| |||||| |||||||||||||    
T  8700155 tcaaccaaaatcttgtcttctcaagcactgtcttcaacttctgattttttttctccaatttcgcaatcttaatatccctttcatcaatgaactcttcatc 8700254  T
Q  104 aactaacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccgcaatttggattgtagccatctgtgaca 203  Q
    |||||||||||| |||||||| || |||||  | ||||||||||||||||| || |||||||||||||| || ||||||||||| |  | ||| || |||    
T  8700255 aactaacttgaaaaaactacagcctttgtcgtactgatttttgtagtttctacatccccagaacttttttccacaatttggattctgactatcagtaaca 8700354  T
Q  204 gttcgaacaactgattcttctccacacctgcattc 238  Q
    ||||||||||| |  ||||| ||||||||||||||    
T  8700355 gttcgaacaacagtatcttcaccacacctgcattc 8700389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 151
Target Start/End: Complemental strand, 20482239 - 20482211
Alignment:
Q  123 caacccttgtcaaattgatttttgtagtt 151  Q
    |||||||||||||||||||||||||||||    
T  20482239 caacccttgtcaaattgatttttgtagtt 20482211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 4 - 304
Target Start/End: Original strand, 20598866 - 20599166
Alignment:
Q  4 tcaaccaaaatcttgtcttccccaattcattcttcaactt-tgtattctttttctccaactttgcaattttcaaatccctatcatcagtgaactcttcat 102  Q
    |||||||||||||||||||| | |   || |||||||||| || ||| ||||||||||| || ||||| || | |||||| |||||| ||||||||||||    
T  20598866 tcaaccaaaatcttgtcttctcaagcacagtcttcaacttctgaatt-tttttctccaatttcgcaatcttaatatccctttcatcaatgaactcttcat 20598964  T
Q  103 caactaacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccgcaatttggattgtagccatctgtgac 202  Q
    ||||||||||||| |||||||| || |||||  | ||||||||||||||||| |||||||| |||||||| || ||||||||||| |  | ||| || ||    
T  20598965 caactaacttgaaaaaactacagcctttgtcgtactgatttttgtagtttctacaaccccataacttttttccacaatttggattctgactatcagtaac 20599064  T
Q  203 agttcgaacaactgattcttctccacacctgcattccgtgattgctctctttctaagactagaaccaacagacccagctgattgacccattttcttcgac 302  Q
    ||||||||||||    ||||| ||||||||||||||    |||||||||||||| ||| | ||||| || || ||||| || |||| ||||| |||||||    
T  20599065 agttcgaacaacaatatcttcaccacacctgcattcaaaaattgctctctttctcagattcgaaccgacggaaccagcagactgactcatttgcttcgac 20599164  T
Q  303 at 304  Q
    ||    
T  20599165 at 20599166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 187
Target Start/End: Original strand, 35663793 - 35663885
Alignment:
Q  95 ctcttcatcaactaacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccgcaatttggatt 187  Q
    ||||||||| | |||||| || ||||||||||| || ||||| ||||| ||||| ||| |||| ||||| || |||||||| || ||||||||    
T  35663793 ctcttcatccagtaacttaaaaaaactacaacctttatcaaagtgattcttgtaatttttgcatccccaaaattttttcccacagtttggatt 35663885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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