View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17357_low_23 (Length: 298)
Name: NF17357_low_23
Description: NF17357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17357_low_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 8057441 - 8057168
Alignment:
| Q |
9 |
gagaagaaagaacgataaccaccgaagaacttggagatgatcttctgaataggaatacaaagcaaggaaggccaggtggaggtgcaagtgttccaccata |
108 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8057441 |
gagaagaaagaacgataaccactgaagaacttggagatgatcttctgaataggaatacaaagcaaggaaggccaggtggaggtgcaagtgttccaccata |
8057342 |
T |
|
| Q |
109 |
gatcctcgttgtcgttgcagatcatgtggcggaattcagaagacactgaggataacatgatcaaggtttcaccgccgaggcctggaagaatgtgagttag |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8057341 |
gatcctcgttgtcgttgcagatcatgtggcggaattcagaagacactgaggataacatgatcaaggtttcaccgccgaggcgtggaagaatgtgagttag |
8057242 |
T |
|
| Q |
209 |
aatgatgtctggacataacctactgaaattattcatgatgggagaaccgtgaacgaccaaattgtagatgaagc |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8057241 |
aatgatgtctggacataacctactgaaattattcatgatgggagaaccgtgaacgaccaaattgtagatgaagc |
8057168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 7500784 - 7500824
Alignment:
| Q |
210 |
atgatgtctggacataacctactgaaattattcatgatggg |
250 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7500784 |
atgatgtctggatctaacctactgaaattattcatgatggg |
7500824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 160
Target Start/End: Complemental strand, 27246418 - 27246330
Alignment:
| Q |
69 |
agcaaggaaggccaggtggaggtgcaagtgttccaccatagatcctcgttgtcgttgcagatcatgtggcggaattcagaagacactgagga |
160 |
Q |
| |
|
||||| |||||||| || |||||||| |||||| ||||| ||| | |||||||||||||||||||||||| ||| ||||| || ||||| |
|
|
| T |
27246418 |
agcaaagaaggccatgttgaggtgcatatgttccgccataaatctt---tgtcgttgcagatcatgtggcggagttctgaagatacggagga |
27246330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 176
Target Start/End: Complemental strand, 27253198 - 27253094
Alignment:
| Q |
69 |
agcaaggaaggccaggtggaggtgcaagtgttccaccatagatcctcgttgtcgttgcagatcatgtggcggaattcagaagacactgaggataacatga |
168 |
Q |
| |
|
||||| |||||||| || || ||||| |||||| ||||||||| ||||||| |||||||||||||||||| ||| ||||| || ||||||| ||| |
|
|
| T |
27253198 |
agcaaagaaggccatgttgaagtgcatatgttccgccatagatcttcgttgt---tgcagatcatgtggcggagttctgaagatacacaggataatatgg |
27253102 |
T |
|
| Q |
169 |
tcaaggtt |
176 |
Q |
| |
|
| |||||| |
|
|
| T |
27253101 |
ttaaggtt |
27253094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 235
Target Start/End: Complemental strand, 27240871 - 27240723
Alignment:
| Q |
87 |
gaggtgcaagtgttccaccatagatcctcgttgtcgttgcagatcatgtggcggaattcagaagacactgaggataacatgatcaaggtttcaccgccga |
186 |
Q |
| |
|
|||||||| |||||| ||||||||| ||||||| || ||| |||||||| |||| ||| ||| | || ||| |||| | ||| |||||| ||| ||| |
|
|
| T |
27240871 |
gaggtgcatatgttccgccatagatcttcgttgttgtggcaaatcatgtgacggagttctgaacatacagagaataagacgattaaggttgtgccgtcga |
27240772 |
T |
|
| Q |
187 |
ggcctggaagaatgtgagttagaatgatgtctggacataacctactgaa |
235 |
Q |
| |
|
||| ||||| ||||| || | |||||||||||| |||||||||||| |
|
|
| T |
27240771 |
ggcggggaaggatgtgggtatgcatgatgtctggatctaacctactgaa |
27240723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University