View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17357_low_25 (Length: 297)
Name: NF17357_low_25
Description: NF17357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17357_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 115 - 281
Target Start/End: Original strand, 2948364 - 2948530
Alignment:
| Q |
115 |
aaccatatacaaaatttactatatagtttttcattagaacatttccaatggggagatcaccatgttgtgaaaaggttggtttaaagaaagggccatggac |
214 |
Q |
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| T |
2948364 |
aaccatatacacaatttactatatagtttttcattagaacatttccaatggggagatcaccatgttgtgaaaaggttggtttaaagaaagggccatggac |
2948463 |
T |
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| Q |
215 |
acctgaggaagatcaaaagctcttatcatacattgaagaacatggtcatggaagctggcgttctttg |
281 |
Q |
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| T |
2948464 |
atctgaggaagatcaaaagctcttatcatacattgaagaacatggtcatggaagctggcgttctttg |
2948530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 2948257 - 2948316
Alignment:
| Q |
8 |
aaattattctctgcccatctcattaatttcttgtacatagctacttgatcaacttatata |
67 |
Q |
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| T |
2948257 |
aaattcttctctgcccatctcattaatttcttgtacatagctacttgatcaacttatata |
2948316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 171 - 281
Target Start/End: Original strand, 3910285 - 3910395
Alignment:
| Q |
171 |
tcaccatgttgtgaaaaggttggtttaaagaaagggccatggacacctgaggaagatcaaaagctcttatcatacattgaagaacatggtcatggaagct |
270 |
Q |
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| T |
3910285 |
tcaccatgttgtgacaaagttggtttaaagaaaggtccatggactccagaagaagatcaaaaactcttagcttatattgatgaacatggtcatggaagtt |
3910384 |
T |
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| Q |
271 |
ggcgttctttg |
281 |
Q |
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| T |
3910385 |
ggcgtgctttg |
3910395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 275
Target Start/End: Original strand, 31999664 - 31999778
Alignment:
| Q |
161 |
aatggggagatcaccatgttgtgaaaaggttggtttaaagaaagggccatggacacctgaggaagatcaaaagctcttatcatacattgaagaacatggt |
260 |
Q |
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|||||| || ||||| |||||||| || ||||| || |||||||| |||||||| |||||||||| ||||| ||| || | || ||||||||| |||| |
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| T |
31999664 |
aatgggtaggtcaccttgttgtgagaaagttggattgaagaaaggaccatggactgctgaggaagaccaaaaactcatagcttatattgaagaatttggt |
31999763 |
T |
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| Q |
261 |
catggaagctggcgt |
275 |
Q |
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| T |
31999764 |
catggaagctggcgt |
31999778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 273
Target Start/End: Original strand, 31939368 - 31939480
Alignment:
| Q |
161 |
aatggggagatcaccatgttgtgaaaaggttggtttaaagaaagggccatggacacctgaggaagatcaaaagctcttatcatacattgaagaacatggt |
260 |
Q |
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| T |
31939368 |
aatgggtaggtcaccttgttgtgagaaagttagattgaagaaaggaccatggactcctgaggaagaccaacaactcatagcttatattaaagaatttggt |
31939467 |
T |
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| Q |
261 |
catggaagctggc |
273 |
Q |
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| T |
31939468 |
catggaagctggc |
31939480 |
T |
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